Welcome to siRNA prediction page
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These are predicted siRNA using Gwt1 protein of Rhizopus oryzae. Antisense sequences of siRNAs: Antisense strand targeting mRNA sequence. Position on mRNA: denotes the position of first nucleotide of mRNA target sequence. mRNA target sequence: denotes sequence of mRNA against which siRNA is generated. Target accessibility: Probability of target sequence to be unpaired for binding with siRNA. Efficacy: denotes the efficacy of siRNAs (highest efficacy more potent to degrade the mRNA). Sequences are in descending order of efficacy.
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| Antisense Sequences of siRNA | Position on mRNA | mRNA target sequence | Target accessibility | Efficacy |
| UUCUUUUUGUGGUCUCUUC | 84 | GAAGAGACCACAAAAAGAA | 0.008413 | 1.088722 |
| AUGAUUUCAAUAAACUAGG | 310 | CCUAGUUUAUUGAAAUCAU | 0.064887 | 1.06605 |
| UUGAUAGAUAACAAUGACA | 522 | UGUCAUUGUUAUCUAUCAA | 0.035994 | 1.050791 |
| UAAACUAGGCUGCUUAUUG | 300 | CAAUAAGCAGCCUAGUUUA | 0.002235 | 1.043218 |
| UUUGGUAGCUGAAUGGACU | 692 | AGUCCAUUCAGCUACCAAA | 0.001118 | 1.039009 |
| UCUACUUUAGCAAAUCGUC | 197 | GACGAUUUGCUAAAGUAGA | 0.00138 | 1.028282 |
| UCUUCUUUUUGUGGUCUCU | 86 | AGAGACCACAAAAAGAAGA | 0.006157 | 1.02452 |
| UUCCUGAUAAUCCACACUU | 384 | AAGUGUGGAUUAUCAGGAA | 0.014195 | 1.019031 |
| UUUCUGAACUCAUUGGACU | 715 | AGUCCAAUGAGUUCAGAAA | 0.074312 | 1.017755 |
| AACAAUGACAAUAAUGGCC | 513 | GGCCAUUAUUGUCAUUGUU | 0.062028 | 1.017519 |