Welcome to siRNA prediction page
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These are predicted siRNA using FTR1 protein of Rhizopus oryzae. Antisense sequences of siRNAs: Antisense strand targeting mRNA sequence. Position on mRNA: denotes the position of first nucleotide of mRNA target sequence. mRNA target sequence: denotes sequence of mRNA against which siRNA is generated. Target accessibility: Probability of target sequence to be unpaired for binding with siRNA. Efficacy: denotes the efficacy of siRNAs (highest efficacy more potent to degrade the mRNA). Sequences are in descending order of efficacy.
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| Antisense Sequences of siRNA | Position on mRNA | mRNA target sequence | Target accessibility | Efficacy |
| UUAGCCAACUUGACCUUCC | 347 | GGAAGGUCAAGUUGGCUAA | 0.02931 | 1.08151 |
| UAAACAGACCAGCUGCACC | 160 | GGUGCAGCUGGUCUGUUUA | 0.002808 | 1.076182 |
| UAGCCGUAUUGUUCCAACC | 832 | GGUUGGAACAAUACGGCUA | 0.011836 | 1.047036 |
| UGAGACUCUGUAACUAAUG | 729 | CAUUAGUUACAGAGUCUCA | 0.001444 | 1.045106 |
| UUAUAAACAGGAGAUUCUG | 113 | CAGAAUCUCCUGUUUAUAA | 0.007974 | 1.044136 |
| UUGCUUUAGCCAACUUGAC | 352 | GUCAAGUUGGCUAAAGCAA | 0.025838 | 1.043839 |
| UGCUUUAGCCAACUUGACC | 351 | GGUCAAGUUGGCUAAAGCA | 0.070467 | 1.042892 |
| UUCUGUAUUAAACAUUCUC | 99 | GAGAAUGUUUAAUACAGAA | 0.016518 | 1.034888 |
| UUCACUGUUGGACUUUUGC | 372 | GCAAAAGUCCAACAGUGAA | 0.048689 | 1.028552 |
| UAACAGCAGACAAAGAGCC | 884 | GGCUCUUUGUCUGCUGUUA | 0.035103 | 1.028392 |