Welcome to siRNA prediction page
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These are predicted siRNA using DHD protein of Rhizopus oryzae. Antisense sequences of siRNAs: Antisense strand targeting mRNA sequence. Position on mRNA: denotes the position of first nucleotide of mRNA target sequence. mRNA target sequence: denotes sequence of mRNA against which siRNA is generated. Target accessibility: Probability of target sequence to be unpaired for binding with siRNA. Efficacy: denotes the efficacy of siRNAs (highest efficacy more potent to degrade the mRNA). Sequences are in descending order of efficacy.
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| Antisense Sequences of siRNA | Position on mRNA | mRNA target sequence | Target accessibility | Efficacy |
| UUAGUGGACAUCUUGAACU | 806 | AGUUCAAGAUGUCCACUAA | 0.007881 | 1.183679 |
| UUUGAUGUCAGAGACUUCG | 330 | CGAAGUCUCUGACAUCAAA | 0.036543 | 1.112734 |
| UAGUCUUGAAUUCAGAAUC | 1009 | GAUUCUGAAUUCAAGACUA | 0.010968 | 1.091281 |
| UAACAGAGGGAAUAGCAUC | 1150 | GAUGCUAUUCCCUCUGUUA | 0.016727 | 1.064278 |
| UUCAAUAUCAACCUUGACG | 855 | CGUCAAGGUUGAUAUUGAA | 0.004823 | 1.054583 |
| AAUAGCAUCGUAGUUGACG | 1140 | CGUCAACUACGAUGCUAUU | 0.080706 | 1.048788 |
| UAAGGUAGUCAACACCGUA | 430 | UACGGUGUUGACUACCUUA | 0.001238 | 1.046796 |
| AAGGUAGUCAACACCGUAC | 429 | GUACGGUGUUGACUACCUU | 0.002128 | 1.040381 |
| AAAACCUUCGUCUUCAGCC | 1086 | GGCUGAAGACGAAGGUUUU | 0.005328 | 1.038367 |
| UUGAAUAAGAACUCAACAC | 407 | GUGUUGAGUUCUUAUUCAA | 0.016989 | 1.037821 |