Welcome to siRNA prediction page
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These are predicted siRNA using CYP51 protein of Rhizopus oryzae. Antisense sequences of siRNAs: Antisense strand targeting mRNA sequence. Position on mRNA: denotes the position of first nucleotide of mRNA target sequence. mRNA target sequence: denotes sequence of mRNA against which siRNA is generated. Target accessibility: Probability of target sequence to be unpaired for binding with siRNA. Efficacy: denotes the efficacy of siRNAs (highest efficacy more potent to degrade the mRNA). Sequences are in descending order of efficacy.
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| Antisense Sequences of siRNA | Position on mRNA | mRNA target sequence | Target accessibility | Efficacy |
| UAAAGUAAACUUGAGAGGG | 35 | CCCUCUCAAGUUUACUUUA | 0.080319 | 1.102553 |
| UUUUUUGACAGGUUUGAAG | 307 | CUUCAAACCUGUCAAAAAA | 0.001399 | 1.087536 |
| AUGAUCGUAGGUGAAAUCG | 1101 | CGAUUUCACCUACGAUCAU | 0.01111 | 1.082388 |
| UUACUUUCCAAAUUCGAUC | 224 | GAUCGAAUUUGGAAAGUAA | 0.004314 | 1.080532 |
| UGAAUGACAUAGUAAGUCG | 74 | CGACUUACUAUGUCAUUCA | 0.11507 | 1.076381 |
| UCGCUUGACAAAGGUACCG | 1503 | CGGUACCUUUGUCAAGCGA | 0.002222 | 1.073381 |
| UGACAUAGUAAGUCGCUAG | 70 | CUAGCGACUUACUAUGUCA | 0.227626 | 1.065293 |
| UAUAAAGUAAACUUGAGAG | 37 | CUCUCAAGUUUACUUUAUA | 0.082585 | 1.063398 |
| AUCGUAGGUGAAAUCGACC | 1098 | GGUCGAUUUCACCUACGAU | 0.006058 | 1.061653 |
| UUCGACAUCAAAUCGCUUG | 1515 | CAAGCGAUUUGAUGUCGAA | 0.071542 | 1.059546 |