Welcome to siRNA prediction page
----------------------------------------------------------------------------------------------------------------------------------------------------
These are predicted siRNA using CotH3 protein of Rhizopus oryzae. Antisense sequences of siRNAs: Antisense strand targeting mRNA sequence. Position on mRNA: denotes the position of first nucleotide of mRNA target sequence. mRNA target sequence: denotes sequence of mRNA against which siRNA is generated. Target accessibility: Probability of target sequence to be unpaired for binding with siRNA. Efficacy: denotes the efficacy of siRNAs (highest efficacy more potent to degrade the mRNA). Sequences are in descending order of efficacy.
------------------------------------------------------------------------------------------------------------------------------------------------------
Click here to download
| Antisense Sequences of siRNA | Position on mRNA | mRNA target sequence | Target accessibility | Efficacy |
| UUGAUAUAGGAGAAUUGAG | 773 | CUCAAUUCUCCUAUAUCAA | 0.06551 | 1.154679 |
| UUGUUGAUCAUGACAGCGC | 1253 | GCGCUGUCAUGAUCAACAA | 0.006628 | 1.105393 |
| UUGACUGUCAUCUCCGUGG | 402 | CCACGGAGAUGACAGUCAA | 0.014626 | 1.104111 |
| UUGAGUGAUAUCAUCCAAC | 759 | GUUGGAUGAUAUCACUCAA | 0.083366 | 1.10101 |
| UAAGUGUCACUUGCUGUCC | 112 | GGACAGCAAGUGACACUUA | 0.00281 | 1.095614 |
| AUUAUUGAACAGCACACGC | 1329 | GCGUGUGCUGUUCAAUAAU | 0.002075 | 1.081532 |
| UUUGCUUCCAGAACGAGUC | 342 | GACUCGUUCUGGAAGCAAA | 0.01186 | 1.072187 |
| UAGAAAUAGAUUGAUUUCC | 1678 | GGAAAUCAAUCUAUUUCUA | 0.035938 | 1.069689 |
| UUGUGUUUCUUGCCAGCAC | 530 | GUGCUGGCAAGAAACACAA | 0.078169 | 1.069013 |
| UUGAGUUUGUGAUUCCAUC | 241 | GAUGGAAUCACAAACUCAA | 0.206498 | 1.066541 |