Welcome to siRNA prediction page
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These are predicted siRNA using Cda protein of Rhizopus oryzae. Antisense sequences of siRNAs: Antisense strand targeting mRNA sequence. Position on mRNA: denotes the position of first nucleotide of mRNA target sequence. mRNA target sequence: denotes sequence of mRNA against which siRNA is generated. Target accessibility: Probability of target sequence to be unpaired for binding with siRNA. Efficacy: denotes the efficacy of siRNAs (highest efficacy more potent to degrade the mRNA). Sequences are in descending order of efficacy.
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| Antisense Sequences of siRNA | Position on mRNA | mRNA target sequence | Target accessibility | Efficacy |
| AAAGAUUUGAAGUUCCUCC | 122 | GGAGGAACUUCAAAUCUUU | 0.005263 | 1.100104 |
| UUCAUUGAUAUCCUUGUGC | 459 | GCACAAGGAUAUCAAUGAA | 0.001004 | 1.097152 |
| UGUGAGAACAGUUAGGUCC | 529 | GGACCUAACUGUUCUCACA | 0.239494 | 1.071906 |
| UCAACAUAGCUAUCGUAGG | 923 | CCUACGAUAGCUAUGUUGA | 0.00103 | 1.061072 |
| UCUUCUUAGCAGCUUCAGC | 55 | GCUGAAGCUGCUAAGAAGA | 0.013637 | 1.060956 |
| AAUGUCUUCAUUGAUAUCC | 465 | GGAUAUCAAUGAAGACAUU | 0.035904 | 1.053699 |
| UUCAACAUAGCUAUCGUAG | 924 | CUACGAUAGCUAUGUUGAA | 0.001065 | 1.051799 |
| UUGUAGACAAAGUUGCUAG | 227 | CUAGCAACUUUGUCUACAA | 0.006378 | 1.039767 |
| UAAAGUUGAGUGGCAAUCC | 824 | GGAUUGCCACUCAACUUUA | 0.026476 | 1.026686 |
| UUCGUGAGUCAAGACAAUU | 978 | AAUUGUCUUGACUCACGAA | 0.008866 | 1.021145 |