Welcome to siRNA prediction page
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These are predicted siRNA using CaN protein of Rhizopus oryzae. Antisense sequences of siRNAs: Antisense strand targeting mRNA sequence. Position on mRNA: denotes the position of first nucleotide of mRNA target sequence. mRNA target sequence: denotes sequence of mRNA against which siRNA is generated. Target accessibility: Probability of target sequence to be unpaired for binding with siRNA. Efficacy: denotes the efficacy of siRNAs (highest efficacy more potent to degrade the mRNA). Sequences are in descending order of efficacy.
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| Antisense Sequences of siRNA | Position on mRNA | mRNA target sequence | Target accessibility | Efficacy |
| UUGAAGUUGAUUAUCUUUC | 348 | GAAAGAUAAUCAACUUCAA | 0.060585 | 1.10272 |
| UUUGUCUUUGUCCAAUUUC | 60 | GAAAUUGGACAAAGACAAA | 0.003419 | 1.100988 |
| UUAUCUUUCAAGUUAUUUC | 338 | GAAAUAACUUGAAAGAUAA | 0.015986 | 1.04829 |
| UAGUUUUGUCCACAAUUUG | 367 | CAAAUUGUGGACAAAACUA | 0.020601 | 1.045901 |
| UACAUCUGUGUUUUCAACC | 444 | GGUUGAAAACACAGAUGUA | 0.04561 | 1.045122 |
| UUUGAAAUGAAUCCGUCUC | 284 | GAGACGGAUUCAUUUCAAA | 0.00696 | 1.044529 |
| UUUGUUGAAGUUGAUUAUC | 352 | GAUAAUCAACUUCAACAAA | 0.022372 | 1.0428 |
| UUUAUUUCCACGAGCACUG | 222 | CAGUGCUCGUGGAAAUAAA | 0.007216 | 1.032332 |
| UUUUGUCCACAAUUUGUUG | 364 | CAACAAAUUGUGGACAAAA | 0.012566 | 1.029159 |
| UAUCUUUCAAGUUAUUUCC | 337 | GGAAAUAACUUGAAAGAUA | 0.017666 | 1.023154 |