Welcome to siRNA prediction page
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These are predicted siRNA using ARP protein of Rhizopus oryzae. Antisense sequences of siRNAs: Antisense strand targeting mRNA sequence. Position on mRNA: denotes the position of first nucleotide of mRNA target sequence. mRNA target sequence: denotes sequence of mRNA against which siRNA is generated. Target accessibility: Probability of target sequence to be unpaired for binding with siRNA. Efficacy: denotes the efficacy of siRNAs (highest efficacy more potent to degrade the mRNA). Sequences are in descending order of efficacy.
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| Antisense Sequences of siRNA | Position on mRNA | mRNA target sequence | Target accessibility | Efficacy |
| UAAAUUAUGAGCAUCAAGC | 345 | GCUUGAUGCUCAUAAUUUA | 0.001364 | 1.141557 |
| UUAGUUAACACCUCGUCUU | 110 | AAGACGAGGUGUUAACUAA | 0.016761 | 1.138383 |
| UUUAGUUAACACCUCGUCU | 111 | AGACGAGGUGUUAACUAAA | 0.016357 | 1.134651 |
| UUCUUUAGUUAACACCUCG | 114 | CGAGGUGUUAACUAAAGAA | 0.018211 | 1.122017 |
| UUUAGGUACAGCCUUGUCC | 153 | GGACAAGGCUGUACCUAAA | 0.024923 | 1.119189 |
| AUAUUGAUCAAGUUCAUCG | 489 | CGAUGAACUUGAUCAAUAU | 0.009567 | 1.112289 |
| UAAAUCGCACAAGUCUCGC | 717 | GCGAGACUUGUGCGAUUUA | 0.007212 | 1.090279 |
| UUACAUUUGAAACAGUAAC | 1253 | GUUACUGUUUCAAAUGUAA | 0.036019 | 1.086061 |
| UUAAUAGUCGUUAAGCAUG | 779 | CAUGCUUAACGACUAUUAA | 0.326525 | 1.079257 |
| UGUAUUUUCAUCACACGUC | 261 | GACGUGUGAUGAAAAUACA | 0.088302 | 1.069746 |