Welcome to siRNA prediction page
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These are predicted siRNA using ARF protein of Rhizopus oryzae. Antisense sequences of siRNAs: Antisense strand targeting mRNA sequence. Position on mRNA: denotes the position of first nucleotide of mRNA target sequence. mRNA target sequence: denotes sequence of mRNA against which siRNA is generated. Target accessibility: Probability of target sequence to be unpaired for binding with siRNA. Efficacy: denotes the efficacy of siRNAs (highest efficacy more potent to degrade the mRNA). Sequences are in descending order of efficacy.
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| Antisense Sequences of siRNA | Position on mRNA | mRNA target sequence | Target accessibility | Efficacy |
| UAUACUAGUCUGUCCACCU | 204 | AGGUGGACAGACUAGUAUA | 0.052494 | 1.076342 |
| UUUAUCUACACUAUCAACU | 261 | AGUUGAUAGUGUAGAUAAA | 0.020214 | 1.073037 |
| UUAACCUUAUACUAGUCUG | 211 | CAGACUAGUAUAAGGUUAA | 0.020791 | 1.069804 |
| UUGAUAAACCAAGCGCGUC | 409 | GACGCGCUUGGUUUAUCAA | 0.001666 | 1.061683 |
| UAGUCUGUCCACCUAAAUC | 199 | GAUUUAGGUGGACAGACUA | 0.032215 | 1.060868 |
| UUAUACUAGUCUGUCCACC | 205 | GGUGGACAGACUAGUAUAA | 0.055716 | 1.057018 |
| UCCAAUAGUAGGAAUGGUC | 132 | GACCAUUCCUACUAUUGGA | 0.018806 | 1.022053 |
| UUUUGUAUGUUACAGUUUC | 160 | GAAACUGUAACAUACAAAA | 0.032481 | 1.01613 |
| AAUGUUGAUAAACCAAGCG | 413 | CGCUUGGUUUAUCAACAUU | 0.005211 | 1.013435 |
| UUAUAAAUAGAAUAUUGUC | 440 | GACAAUAUUCUAUUUAUAA | 0.076485 | 1.002921 |