Browse result page of IndioBioDb
The total number entries retrieved from this search are 50
| ID | Resource Name | Resource Description | Resource Link | Journal | Class | Source | Year of Publication | PMID | Corresponding Author | Institute | City | State | Functional Status | Funding Agency | Resource category | Other Repository | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1011 | HRGPrered | Prediction of herbicide resistant genes with k-mer nucleotide compositional features and support vector machine | http://cabgrid.res.in:8080/hrgpred/ | Scientific Reports | BioDrug | DNA | 2019 | 30692561 | A R Rao | ar.rao@icar.gov.in | ICAR - Indian Agricultural Statistics Research Institute (IASRI) | New Delhi | New Delhi | ICAR | Functional | Prediction | NA |
| 1013 | funbarRF | DNA barcode-based fungal species prediction using multiclass Random Forest supervised learning model | http://cabgrid.res.in:8080/funbarrf/ | BMC Genomics | Genomics | DNA | 2019 | 30616524 | A R Rao | rao.cshl.work@gmail.com | ICAR - Indian Agricultural Statistics Research Institute (IASRI) | New Delhi | New Delhi | ICAR | Functional | Prediction | NA |
| 1036 | GCAC | Galaxy for compound activity classification | http://ccbb.jnu.ac.in/gcac | BMC Bioinformatics | Cheminformatics | Other | 2019 | 30717669 | Andrew Lynn | andrew@jnu.ac.in | Jawaharlal Nehru University (JNU) | New Delhi | New Delhi | JNU | Functional | Prediction | bio.tools |
| 1039 | MtBrowse | An integrative genomics browser for human mitochondrial DNA | http://ab-openlab.csir.res.in/cgi-bin/gb2/gbrowse/mitolink/ | Mitochondrion | Genomics Interactome | Protein | 2019 | 30738202 | Anshu Bhardwaj | anshub@osdd.net | CSIR - Institute of Microbial Technology (CSIR-IMTECH) | Chandigarh | Chandigarh | CSIR | Functional | Database | NA |
| 1059 | ImmtorLig_DB | Repertoire of virtually screened small molecules against immune receptors to bolster host immunity | http://bioinfo.imtech.res.in/bvs/immtor/ | Scientific Reports | Cheminformatics Vaccinomics | Other | 2019 | 30816123 | Balvinder Singh Javed N Agrewala | bvs@imtech.res.in jagrewala@iitrpr.ac.in | CSIR - Institute of Microbial Technology (CSIR-IMTECH) Indian Institute of Technology Ropar (IIT RPR) | Chandigarh | Chandigarh | CSIR | Functional | Database | NA |
| 1061 | NUTRIFISHIN | Nutritional composition of food fishes and their importance in providing food and nutritional security | http://www.cifri.res.in/nutrifishin/index.php | The Journal of Biological Chemistry | BioDrug | Other | 2019 | 31151648 | Bimal Prasanna Mohanty | bimal.mohanty@icar.gov.in | ICAR - Central Inland Fisheries Research Institute (CIFRI) | Kolkata | West Bengal | ICAR | Functional | Database | NA |
| 1082 | PAmiRDB | Resource for plant miRNAs targeting viruses | http://bioinfo.icgeb.res.in/pamirdb | Scientific Reports | Genomics | RNA | 2019 | 30874591 | Dinesh Gupta | dinesh@icgeb.res.in | DBT - International Centre for Genetic Engineering and Biotechnology (ICGEB) | New Delhi | New Delhi | DBT | Functional | Database | NA |
| 1095 | ApicoTFdb | The Comprehensive Web Repository of Apicomplexan Transcription Factors and Transcription-Associated Co-Factors | http://bioinfo.icgeb.res.in/PtDB/ | Database: The Journal of Biological Databases and Curation | Genomics | Other | 2019 | 31529106 | Dinesh Gupta | dinesh@icgeb.res.in | DBT - International Centre for Genetic Engineering and Biotechnology (ICGEB) | New Delhi | New Delhi | DBT | Functional | Database | bio.tools |
| 1096 | TamiRPred | Development of species specific putative miRNA and its target prediction tool in wheat | http://webtom.cabgrid.res.in/tamirpred | Scientific Reports | Genomics | RNA | 2019 | 30846812 | Dinesh Kumar | dinesh.kumar@icar.gov.in | ICAR - Indian Council of Agricultural Research | New Delhi | New Delhi | ICAR | Functional | Prediction | NA |
| 1102 | PolyMorphPredict | A Universal Web-Tool for Rapid Polymorphic Microsatellite Marker Discovery From Whole Genome and Transcriptome Data | http://webtom.cabgrid.res.in/polypred/ | Frontiers in plant science | Genomics | DNA | 2019 | 30687361 | Dinesh Kumar | dinesh.kumar@icar.gov.in | ICAR - Indian Council of Agricultural Research | New Delhi | New Delhi | ICAR | Functional | Prediction | NA |
| 1112 | VacTarBac | A Web Resource for Designing Subunit Vaccine Against Major Pathogenic Species of Bacteria | http://webs.iiitd.edu.in/raghava/vactarbac/ | Frontiers in Immunology | Vaccinomics BioDrug | Protein | 2019 | 30356876 | Gajendra PS Raghava | raghava@iiitd.ac.in | Indraprastha Institute of Information Technology (IIITD) | New Delhi | New Delhi | IIIT | Functional | Prediction | NA |
| 1113 | HumCFS | A database of fragile sites in human chromosomes | http://webs.iiitd.edu.in/raghava/humcfs/ | BMC Genomics | Genomics | DNA | 2019 | 30999860 | Gajendra PS Raghava | raghava@iiitd.ac.in | Indraprastha Institute of Information Technology (IIITD) | New Delhi | New Delhi | IIIT | Functional | Database | bio.tools |
| 1114 | ccPDB 2.0 | An updated version of datasets created and compiled from Protein Data Bank | https://webs.iiitd.edu.in/raghava/ccpdb/ | Database: The Journal of Biological Databases and Curation | Protein Structure Protein Function | Protein | 2019 | 30689843 | Gajendra PS Raghava | raghava@iiitd.ac.in | Indraprastha Institute of Information Technology (IIITD) | New Delhi | New Delhi | IIIT | Functional | Database | bio.tools |
| 1115 | AntiMPmod | Prediction of Antimicrobial Potential of a Chemically Modified Peptide From Its Tertiary Structure | http://webs.iiitd.edu.in/raghava/antimpmod/ | Frontiers in Immunology | Vaccinomics Cheminformatics | Protein | 2019 | 30416494 | Gajendra PS Raghava | raghava@iiitd.ac.in | Indraprastha Institute of Information Technology (IIITD) | New Delhi | New Delhi | IIIT | Functional | Prediction | NA |
| 1116 | PPDBench | Benchmarking of docking software on protein-peptide complexes. | https://webs.iiitd.edu.in/raghava/ppdbench/ | BMC Bioinformatics | Protein Function | Protein | 2019 | 30717654 | Gajendra PS Raghava | raghava@iiitd.ac.in | Indraprastha Institute of Information Technology (IIITD) | New Delhi | New Delhi | IIIT | Functional | Prediction | NA |
| 1117 | CancerLSP | Liver Heptacellular Carcinoma Stage Prediction | https://webs.iiitd.edu.in/raghava/cancerlsp/ | PLOS One | Genomics | Other | 2019 | 31490960 | Gajendra PS Raghava | raghava@iiitd.ac.in | Indraprastha Institute of Information Technology (IIITD) | New Delhi | New Delhi | IIIT | Functional | Database | bio.tools |
| 1118 | ImmunoSPdb | An archive of immunosuppressive peptides | http://webs.iiitd.edu.in/raghava/immunospdb/ | Database: The Journal of Biological Databases and Curation | Vaccinomics | Protein | 2019 | 30753476 | Gajendra PS Raghava | raghava@iiitd.ac.in | Indraprastha Institute of Information Technology (IIITD) | New Delhi | New Delhi | IIIT | Functional | Database | NA |
| 1268 | CRCRpred | Risk score prediction of colorectal cancer from the proteins involved in mitochondrial apoptotic pathway | http://webs.iiitd.edu.in/raghava/sambinder/ | PLOS One | Genomics | Protein | 2019 | 31498794 | Gajendra PS Raghava | raghava@iiitd.ac.in | Indraprastha Institute of Information Technology (IIITD) | New Delhi | New Delhi | IIIT | Functional | Prediction | bio.tools |
| 1269 | CancerSPP | Prediction of skin cutaneous melanoma using genomics profile | https://webs.iiitd.edu.in/raghava/cancerspp/ | Scientific Reports | Genomics | Other | 2019 | 31673075 | Gajendra PS Raghava | raghava@iiitd.ac.in | Indraprastha Institute of Information Technology (IIITD) | New Delhi | New Delhi | IIIT | Functional | Database | bio.tools |
| 1274 | NeuroPIpred | A tool to predict, design and scan insect neuropeptides | https://webs.iiitd.edu.in/raghava/neuropipred/ | Scientific Reports | Vaccinomics | Protein | 2019 | 30914676 | Gajendra PS Raghava Indrakant K. Singh | raghava@iiitd.ac.in iksingh@db.du.ac.in | Indraprastha Institute of Information Technology (IIITD) | New Delhi | New Delhi | IIIT | Functional | Database | NA |
| 1313 | RepEx | A method for repeat extraction | http://bioserver2.physics.iisc.ac.in/RepEx/ | Computational Biology and Chemistry | Genomics | Other | 2019 | 30598392 | K Sekar | sekar@iisc.ac.in | Indian Institute of Science (IISc) | Bangalore | Karnataka | IISc | Functional | Prediction | bio.tools |
| 1314 | ACMS | A repository of Alternate Conformations in Main and Side Chains of Protein Structures | http://iris.physics.iisc.ac.in/acms/ | Journal of Applied Cyrstallography | Protein Structure | Protein | 2019 | NA | K Sekar | sekar@iisc.ac.in | Indian Institute of Science (IISc) | Bangalore | Karnataka | IISc | Functional | Database | NA |
| 1324 | Small Dataset Modelling | Tool for QSAR model development using small dataset | https://dtclab.webs.com/software-tools | Journal of chemical information and modeling | Cheminformatics | Other | 2019 | 31525295 | Kumal Roy | kunal.roy@jadavpuruniversity.in | Jadavpur University | Kolkata | West Bengal | Other | Functional | Prediction | NA |
| 1332 | Nipah | A method for preidicting and desigining therapeutics against Nipah virus | http://cospi.iiserpune.ac.in/Nipah/ | PLoS Neglected Tropical Diseases | Cheminformatics | Protein | 2019 | 31830030 | M S Madhusudhan | madhusudhan@iiserpune.ac.in | Indian Institute of Science Education and Research (IISERP) | Pune | Maharashtra | IISER | Functional | Prediction | NA |
| 1333 | PIZSA | An Empirical Scoring Scheme for Evaluation of Protein-Protein Interactions | http://cospi.iiserpune.ac.in/pizsa/ | Nucleic Acids Research | Protein Function | Protein | 2019 | 31114890 | M S Madhusudhan | madhusudhan@iiserpune.ac.in | Indian Institute of Science Education and Research (IISERP) | Pune | Maharashtra | IISER | Functional | Prediction | bio.tools |
| 1339 | Anti-flavi | Predict Inhibitors of Flaviviruses Using QSAR and Peptidomimetic Approaches | http://bioinfo.imtech.res.in/manojk/antiflavi | Frontiers in Microbiology | Cheminformatics BioDrug | Other | 2019 | 30619195 | Manoj Kumar | manojk@imtech.res.in | CSIR - Institute of Microbial Technology (CSIR-IMTECH) | Chandigarh | Chandigarh | CSIR | Functional | Prediction | NA |
| 1340 | Anti-Nipah | Computational Identification of Inhibitors Using QSAR Approach Against Nipah Virus | http://bioinfo.imtech.res.in/manojk/antinipah/ | Frontiers in Pharmacology | Cheminformatics | Other | 2019 | 30809147 | Manoj Kumar | manojk@imtech.res.in | CSIR - Institute of Microbial Technology (CSIR-IMTECH) | Chandigarh | Chandigarh | CSIR | Functional | Database | NA |
| 1376 | Seq2Feature | A Comprehensive Web-Based Feature Extraction Tool | https://www.iitm.ac.in/bioinfo/SBFE/index.html | Bioinformatics | Protein Function | Other | 2019 | 31135038 | Michael Gromiha | gromiha@iitm.ac.in | Indian Institute of Technology (IIT M) | Chennai | Tamil Nadu | IIT | Functional | Prediction | bio.tools |
| 1378 | HuVarBase | A Human Variant Database With Comprehensive Information at Gene and Protein Levels | https://www.iitm.ac.in/bioinfo/huvarbase/ | PLOS One | Genomics | DNA | 2019 | 30703169 | Michael Gromiha | gromiha@iitm.ac.in | Indian Institute of Technology (IIT M) | Chennai | Tamil Nadu | IIT | Functional | Prediction | NA |
| 1399 | NAPS Update | Network Analysis of Protein Structures | http://bioinf.iiit.ac.in/NAPS/ | Nucleic Acids Research | Protein Structure Interactome | Protein | 2019 | 31106363 | Nita Parekh | nita@iiit.ac.in | International Institute of Information Technology (IIITH) | Hyderabad | Telangana | IIIT | Functional | Prediction | NA |
| 1402 | LncDisPath | Information network model for Inferring disease and pathway associations of long non-coding RNAs | http://bdbl.nitc.ac.in/LncDisPath/index.html | Journal of Bioinformatics and Computational Biology | Genomics | RNA | 2019 | 31617466 | P V Sunil Kumar | sunilkumarpv@gmail.com | National Institute of Technology | Calicut | Kerala | Other | Functional | Prediction | NA |
| 1407 | VigSatDB | Genome-Wide Microsatellite DNA Marker Database of Three Species of Vigna for Germplasm Characterization and Improvement | http://webtom.cabgrid.res.in/vigna_ssr/ | Database: The Journal of Biological Databases and Curation | Genomics | DNA | 2019 | 31147679 | Pramod Kumar Yadav | pramod.yadav@shiats.edu.in, | Sam Higginbottom University of Agriculture, Technology and Sciences | Allahabad | Uttar Pradesh | Other | Functional | Database | NA |
| 1442 | EcRBPome | A Comprehensive Database of All Known E. Coli RNA-binding Proteins | http://caps.ncbs.res.in/ecrbpome/ | BMC Bioinformatics | Protein Function | RNA | 2019 | 31117939 | Ramanathan Sowdhamini | mini@ncbs.res.in | National Center for Biological Sciences (NCBS) | Bangalore | Karnataka | NCBS | Functional | Database | bio.tools |
| 1443 | GenDiS | Database Update With Improved Approach and Features to Recognize Homologous Sequences of Protein Domain Superfamilies | http://caps.ncbs.res.in/cgi-bin/gendis+/index.py | Database: The Journal of Biological Databases and Curation | Protein Structure | Protein | 2019 | 30943284 | Ramanathan Sowdhamini | mini@ncbs.res.in | National Center for Biological Sciences (NCBS) | Bangalore | Karnataka | NCBS | Functional | Database | NA |
| 1449 | ANDB | Database Based on a Global Survey of Literature on Areca Nut and Associated Health Effects | http://arecanut.icmr.org.in/ | Substance Use & Misuse | BioDrug | Other | 2019 | 31347432 | Ravi Mehrotra | ravi.mehrotra@gov.in | ICMR-National Insttute of Cancer Prevention & Research | Noida | Uttar Pradesh | ICMR | Functional | Database | NA |
| 1450 | AutophagySMBD | Curated database of small molecules that modulate protein targets regulating autophagy | http://www.autophagysmdb.org/ | Autophagy | Cheminformatics | Protein | 2019 | 30669929 | Ravikanth Nanduri | ravikanth.nanduri@gmail.com | CSIR - Institute of Microbial Technology (CSIR-IMTECH) | Chandigarh | Chandigarh | CSIR | Functional | Database | NA |
| 1451 | FisOmics | Portal of fish genomic resources | http://mail.nbfgr.res.in/FisOmics/ | Genomics | Genomics | DNA | 2019 | 30611878 | Ravindra Kumar | Ravindra.kumar1@icar.gov.in | ICAR - National Bureau of Fish Genetic Resources (NBFGR) | Lucknow | Uttar Pradesh | ICAR | Functional | Database | NA |
| 1452 | MedPServer | Database for identification of therapeutic targets and novel leads pertaining to natural products | http://bif.uohyd.ac.in/medserver/ | Chemical biology and drug design | Vaccinomics | Other | 2019 | 30381914 | Ravindranath Singh Rathore Vaibhav Vindal | rsrathore@cusb.ac.in vaibhav@uohyd.ac.in | University of Hyderabad | Hyderabad | Telangana | Other | Functional | Database | NA |
| 1455 | CQNR | Cluster Quality Based Non-Reductional (CQNR) Oversampling Technique and Effector Protein Predictor Based on 3D Structure (EPP3D) of Proteins | http://projectphd.droppages.com/CQNR.html | Computers in Biology and Medicine | Protein Function | Protein | 2019 | 31419629 | Rishika Sen Somnath Tagore Rajat K De | rishikasen_r@isical.ac.in somnath.tagore@biu.ac.il raja | Indian Statistical Institute (ISI) | Kolkata | West Bengal | ISI | Functional | Prediction | bio.tools |
| 1457 | FlavoDB | A web based chemcial repository of flavonoid compounds | http://bioinfo.net.in/flavodb/home.html | 3 Biotech | Cheminformatics | Other | 2019 | 31696036 | Rohan J Meshram | rohan@bioinfo.net.in | University of Pune | Pune | Maharashtra | Other | Functional | Database | bio.tools |
| 1468 | MARome | A resource for annotation of Scaffold and Matrix Attachment Regions | http://196.1.114.46:8080/MARome/index | Nucleic Acids Research | Genomics | Other | 2019 | 31265077 | Samit Chattopadhyay Smriti Mittal Abhijeet Kul | abhijeet@bioinfo.net.in spmittal@unipune.ac.in samit@ii | University of Pune | Pune | Maharashtra | Other | Functional | Database | bio.tools |
| 1480 | LeishInDB | Web-accessible resource for small molecule inhibitors against Leishmania species | http://leishindb.biomedinformri.com/ | Acta tropica | Cheminformatics | Other | 2019 | 30552881 | Saravanan Vijayakumar | saravanan.vij@icmr.gov.in | ICMR - Rajendra Memorial Research Institute of Medical Sciences (RMRIMS) | Patna | Bihar | ICMR | Functional | Database | bio.tools |
| 1486 | AtFusionDB | Database of fusion transcripts in Arabidopsis thaliana | http://www.nipgr.res.in/AtFusionDB | Database: The Journal of Biological Databases and Curation | Genomics | DNA | 2019 | 30624648 | Shailesh Kumar | shailesh@nipgr.ac.in | DBT - National Institute of Plant Genome Research (NIPGR) | New Delhi | New Delhi | DBT | Functional | Database | bio.tools |
| 1489 | CMBdb | A repository of omics data for cytomegalo virus | http://shaktisahislab.com/include/CMV/ | Interdisciplinary Sciences | Genomics | Other | 2019 | 31813095 | Shakti Sahi | Shaktis@gbu.ac.in | Gautam Buddh University | Noida | Uttar Pradesh | Other | Functional | Database | bio.tools |
| 1498 | MorCVD | Database for Host-Pathogen Protein-Protein Interactions of Cardiovascular Diseases Related to Microbes | http://morcvd.sblab-nsit.net/About | Scientific Reports | Interactome | Protein | 2019 | 30858555 | Sonika Bhatnagar | sbhatnagar@nsut.ac.in | Netaji Subhas University of Technology | New Delhi | New Delhi | Other | Functional | Database | NA |
| 1504 | MusatransSSRDB | Transcriptome derived SSR database | http://bioinfnrcb.byethost7.com/nrcbbio/?i=1 | Journal of biosciences | Genomics | DNA | 2019 | 30837356 | Subbaraya Uma | umabinit@yahoo.co.in | ICAR - National Research Centre for Banana | Tiruchirappalli | Tamil Nadu | ICAR | Functional | Database | NA |
| 1515 | RiboD | Comprehensive database for prokaryotic riboswitches | http://ribod.iiserkol.ac.in/ | Bioinformatics | Genomics | RNA | 2019 | 30726866 | Sumit Mukherjee Supratim Sengupta | mukherjee.sumit89@gmail.com supratim.sen@iiserkol.ac.in | Indian Institute of Science Education and Research (IISERK) | Kolkata | Madhya Pradesh | IISER | Functional | Database | bio.tools |
| 1519 | CNSNP | Genome-wide cis-regulatory signatures for modulation of agronomic traits as exemplified by drought yield index (DYI) in chickpea | http://www.cnsnpcicarbase.com | Functional and Integrative Genomics | Genomics | DNA | 2019 | 31177403 | Swarup K. Parida | swarup@nipgr.ac.in | DBT - National Institute of Plant Genome Research (NIPGR) | New Delhi | New Delhi | DBT | Functional | Database | NA |
| 1528 | ABCD | Alzheimer's Disease Biomarkers Comprehensive Database | http://bioinfoindia.org/abcd/ | 3 Biotech | Genomics Vaccinomics | Other | 2019 | 31501752 | Tiratha Raj Singh | tiratharaj@gmail.com | Jaypee University of Information Technology (JUIT) | Solan | Himachal Pradesh | JUIT | Functional | Database | NA |
| 1547 | RemeDB | Tool for rapid prediction of enzyme involved in bioremediation | https://www.niot.res.in/Remedb/ | Journal of Computational Biology | Genomics | Protein | 2019 | 31800321 | Vijay Raghavan Rangamaran Dharani Gopal | vijay.niot@nic.in dharani.niot@nic.in | National Institute of Ocean Technology | Chennai | Tamil Nadu | Other | Functional | Prediction | bio.tools |