ExoProPred
A Webserver To Predict Exosomal Proteins

ExoProPred is a webserver to predict exosomal proteins based on hybrid model that combines machine learning model with motif-search approach. The models are trained on a dataset comprising of 2831 exosomal proteins and 2831 non-exosomal proteins. The performance of the models were evaluated using 5-fold cross-validation. The models were trained on top 70 best features comprising of composition-based and evolutionary information based features as well as on hybrid features(Top 70 features + Motif-search) by implementing random-tree classifiers from the scikit library of python. The datasets were extracted from Uniprot database (Uniprot). This method will be highly useful in the fields of development of non-invasive diagnostic methods, treatments, drug delivery system, designing personalized therapies, etc


Cite: Arora A, Patiyal S, Sharma N, Devi NL, Kaur D, Raghava GP (2023) A random forest model for predicting exosomal proteins using evolutionary information and motifs. Proteomics. e2300231. doi: 10.1002/pmic.202300231.

Predict


This tool allow the user to predict whether the protein is exosomal or not from their amino acid sequence. The module allow users to make the prediction based on either top 70 features (composition and PSSM) or hybrid of top 70 and motif search.

Motif-scan


This module facilitates the user to scan for the exosomal motifs in the submitted sequences. MERCI tool is used to locate the motifs in the sequences. If the motif is found in the sequence, the sequence will be assigned as exosomal.

Standalone


This module provides the standalone version of this method which user can use in the absence of internet or can run larger number of sequences at a time. The perl-based, python-based standalone, and GitHub will be available on this page.

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