CRIP: Computational Resources for predicting protein-macromolecular interactions

Biomolecular Interactions
Brief Introduction
Diseases prediction
Personal Drugs
Vaccines
Biomarkers

Protein-Protein
Databases
Prediction Servers
Slides/Links
Datasets/References

Protein-DNA
Databases
Prediction Servers
Slides/Links
Datasets/References

Protein-RNA
Databases
Prediction Servers
Slides/Links
Datasets/References

Protein-Metabolite
Databases
Prediction Servers
Slides/Links
Datasets/References

Protein-Lipid
Databases
Prediction Servers
Slides/Links
Datasets/References

Protein-Carbohydrate
Databases
Prediction Servers
Slides/Links
Datasets/References

Following are the web servers/resources used for prediction of protein-protein interactions-

S.No	Web-servers	Link	Comment
1.	Protein-Protein Interaction Prediction	http://www-appn.comp.nus.edu.sg/~bioinfo/PPinteraction/	Based on Bayesian Probability
2.	InterPreTS	http://www.russell.embl.de/cgi-bin/interprets2	Interaction Prediction through Tertiary Structure
3.	PIPS	http://prime.ontology.ims.u-tokyo.ac.jp:8081/cgi-bin/PIPS.cgi	for predicting physical protein-protein interactions in yeast, mouse, and human
4.	IPPRED	http://cbi.labri.fr/outils/ippred/
5.	PRISM	http://gordion.hpc.eng.ku.edu.tr/prism/predictions.php	Based on structural matching
6.	cons-PPISP	http://pipe.scs.fsu.edu/ppisp.html	cons-PPISP is a consensus neural network method for predicting protein-protein interaction sites
7.	meta-PPISP	http://pipe.scs.fsu.edu/meta-ppisp.html	A meta server for predicting protein-protein interaction sites
8.	PINUP	http://sparks.informatics.iupui.edu/PINUP/	PINUP: Protein binding site prediction with an empirical scoring function
9.	ProMate	http://bioportal.weizmann.ac.il/promate/	Predicting the location of potential protein-protein binding sites for unbound proteins
10.	InterProSurf	http://curie.utmb.edu/prosurf.html	Prediction of functional sites in monomeric protein surface
11.	PPI-Pred	http://bmbpcu36.leeds.ac.uk/ppi_pred/index.html	Protein-Protein Interface Prediction