CRIP: Computational Resources for predicting protein-macromolecular interactions

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Biomolecular Interactions
 Brief Introduction
 Diseases prediction
 Personal Drugs
 Vaccines
 Biomarkers

Protein-Protein
 Databases
 Prediction Servers
 Slides/Links
 Datasets/References

Protein-DNA
 Databases
 Prediction Servers
 Slides/Links
 Datasets/References

Protein-RNA
 Databases
 Prediction Servers
 Slides/Links
 Datasets/References

Protein-Metabolite
 Databases
 Prediction Servers
 Slides/Links
 Datasets/References

Protein-Lipid
 Databases
 Prediction Servers
 Slides/Links
 Datasets/References

Protein-Carbohydrate
 Databases
 Prediction Servers
 Slides/Links
 Datasets/References

Following are the web servers/resources used for prediction of protein-protein interactions-
S.No Web-servers Link Comment
1. Protein-Protein Interaction Prediction http://www-appn.comp.nus.edu.sg/~bioinfo/PPinteraction/ Based on Bayesian Probability
2. InterPreTS http://www.russell.embl.de/cgi-bin/interprets2 Interaction Prediction through Tertiary Structure
3. PIPS http://prime.ontology.ims.u-tokyo.ac.jp:8081/cgi-bin/PIPS.cgi for predicting physical protein-protein interactions in yeast, mouse, and human
4. IPPRED http://cbi.labri.fr/outils/ippred/
5. PRISM http://gordion.hpc.eng.ku.edu.tr/prism/predictions.php Based on structural matching
6. cons-PPISP http://pipe.scs.fsu.edu/ppisp.html cons-PPISP is a consensus neural network method for predicting protein-protein interaction sites
7. meta-PPISP http://pipe.scs.fsu.edu/meta-ppisp.html A meta server for predicting protein-protein interaction sites
8. PINUP http://sparks.informatics.iupui.edu/PINUP/ PINUP: Protein binding site prediction with an empirical scoring function
9. ProMate http://bioportal.weizmann.ac.il/promate/ Predicting the location of potential protein-protein binding sites for unbound proteins
10. InterProSurf http://curie.utmb.edu/prosurf.html Prediction of functional sites in monomeric protein surface
11. PPI-Pred http://bmbpcu36.leeds.ac.uk/ppi_pred/index.html Protein-Protein Interface Prediction