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References


  1. Chou, P.Y. and Fasman, G.D. (1974) Conformational parameters for amino acids in helical, beta-sheet and random coil regions calculated from proteins. Biochemistry, 13, 211-222.
  2. Chou, P.Y. and Fasman, G.D. (1979) Prediction of beta-turns. Biophys. J., 13, 211-222. [Abstract]
  3. Chou, K.C. (1997) Prediction of beta turns.J. Pept. Res., 49,120-144. [Abstract]
  4. Chou, K.C. and Blinn, J.R. (1997) Classification and prediction of beta turn types. J. Protein chem., 16, 575-595. [Abstract]
  5. Chou, K.C. (2000) Prediction of tight turns and their types in proteins. Analytical Biochem., 286, 1-16. [Abstract]
  6. Garnier, J., Osguthorpe, D.J. and Robson, B. (1978) Analysis and implications of simple methods for predicting the secondary structure of globular proteins. J. Mol. Biol., 120, 97-120. [Abstract]
  7. Gibrat, J.F., Garnier, J. and Robson, B. (1987) Further development of protein secondary structure prediction using information theory. New parameters and consideration of residue pairs. J. Mol. Biol., 198, 425-433. [Abstract]
  8. Guruprasad, K. and Rajkumar, S. (2000) Beta- and gamma-turns in proteins revisited: A new set of amino acid dependent positional preferences and potential. J. Biosci., 25(2), 143-156. [Abstract]
  9. Hutchinson, E.G. and Thornton, J.M. (1996) PROMOTIF-a program to identify and analyze structural motifs in proteins. Protein Sci., 5, 212-220. [Abstract]
  10. Shepherd, A.J., Gorse, D. and Thornton, J.M. (1999) Prediction of the location and type of beta turns in proteins using neural networks. Protein Sci., 8, 1045-1055. [Abstract]
  11. Wilmot, C.M. and Thornton, J.M. (1988) Analysis and prediction of the different types of beta-turns in proteins. J. Mol. Biol., 203, 221-232. [Abstract]
  12. Wilmot, C.M. and Thornton, J.M. (1990) Beta-turns and their distortion: a proposed new nomenclature. Protein Engg., 3(6), 479-493. [Abstract]
  13. Zhang, C.T. and Chou, K.C. (1997) Prediction of beta-turns in proteins by 1-4 & 2-3 correlation model. Biopolymers, 41, 673-702.


Other Useful References


  1. Chou, K.C. and Zhang, C.T. (1995) Prediction of protein structural classes. Critical Reviews in Biochem. and Mol. Biol., 30(4), 275-349. [Abstract]
  2. Kaur, H. and Raghava, G.P.S. (2002) BetaTPred-Prediction of beta-turns in a protein using statistical algorithms. Bioinformatics, 18, 498-499. [Abstract]
  3. Quali, M. and King, R.D. (2000) Cascaded multiple classifiers for secondary structure prediction. Protein Sci., 9, 1162-1176. [Abstract]
  4. Rost, B. and Sander, C. (1993) Improved prediction of protein secondary structure by use of sequence profiles and neural networks. Proc. Natl. Acad. Sci. U.S.A., 90, 7558-7562. [Abstract]
  5. Lewis, P.N., Momany, F.A. and Scheraga, H.A. (1973) Chain reversals in proteins. Biochim. Biophys. Acta, 303, 211-229.
  6. Hutchinson, G. & Thornton,J.M. (1994) Revised set of potentials for beta-turn formation in proteins. Protein Science, 3, 2207-2216. [Abstract]
  7. Jones,D.T. (1999) Protein secondary structure prediction based on position-specific scoring matrices. J. Mol. Biol., 292(2), 195-202. [Abstract]
  8. Kabsch,W. and Sander,C. (1983) Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features. Biopolymers, 22, 2577-2637. [Abstract]
  9. McGregor,M.J., Flores,T.P. and Sternberg,M.J. (1989) Prediction of beta-turns in proteins using neural networks. Protein Eng., 2, 521-526. [Abstract]































































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