HELP PAGE FOR PEPTIDE MAPPING

A user can map his/her peptide/protein sequence against peptides of AHTPDB using (a) Sub-search and (b) Super-search algorithm. (a) Sub-search: User's query peptide is searched against peptides of AHTPDB to identify peptides having identical segments to query peptide. (b) Super-search: User can give a protein sequence to search against peptides of AHTPDB to identify peptides which match within user's protein sequence.

RESULT

1.To perform peptide mapping, paste your peptide/protein sequence in fasta format.

2.User can select either SuperSearch to search for query PROTEIN sequence against peptides of AHTPDB or select SubSearch to search for query PEPTIDE sequence against the peptides of AHTPDB.

3.Finally, click on the Run Analysis! button to submit query.