Here are the links to download datasets used in development of CellPPD: |
CellPPD Dataset | ||
|---|---|---|
| Dataset | Description | Download |
CPPsite1: | It contains 708 known CPPs (positive examples) and 708 randomly generated peptide as non-CPPs. | P N |
CPPsite2: | It contains 187 known CPPs with high uptake efficiency as positive examples and equal number of randomly generated peptide as non-CPPs. | P N |
CPPsite3: | It contains 187 known CPPs with high uptake efficiency as positive examples and 187 CPPs with low uptake efficiency as non-CPPs. | P N |
Independent: | It contains 99 known CPPs collected from the literature, which were not included in the training and 99 randomly generated non-CPPs | P N |
Benchmark Datasets | |||
|---|---|---|---|
| Dataset | Description | Download | Reference |
Sanders-2011a: | It contains 111 experimentally validated CPPs and equal number of non-CPPs (generated randomly from the chicken proteome). | P N | PMID: 21779156 |
Sanders-2011b: | It contains 111 experimentally validated CPPs and 34 experimentally validated non-CPPs. | P N | PMID: 21779156 |
Sanders-2011c: | It contains 111 known CPPs and 111 peptides randomly sampled from 34 known non-CPPs. | P N | PMID: 21779156 |
Dobchev-2010: | It contans 74 known CPPs and 24 known non-CPPs. | P N | PMID: 20402661 |
Hansen-2008: | It contans 66 known CPPs and 19 known non-CPPs. | P N | PMID: 18045726 |
Hallbrink-2005: | It contans 53 known CPPs and 16 known non-CPPs. | P N | Link |