PolysacDB: A comprehensive database of microbial polysaccharide antigens and their antibodies

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Citation: Aithal A, Sharma A, Joshi S, Raghava GPS, Varshney GC (2012) PolysacDB: A Database of Microbial Polysaccharide Antigens and Their Antibodies. PLoS ONE 7(4): e34613. doi:10.1371/journal.pone.0034613
Total Entries - 1

Entry No. - 1   [TOP]
PolysacDB ID2312
Carbohydrate NameLipopolysaccharide   (Drugpedia)
Carbohydrate ClassLipopolysaccharide
MicrobeShigella flexneri serotype 5a   (NCBI Taxonomy)   (Drugpedia)
Basic StructureChemically, the O-antigen is a polysaccharide chain of variable length, built up by repetitive sequences of tetra- to hexasaccharides. It consists of a basic tetrasaccharide repeating unit consisting of three rhamnoses and one N-acetylglucosamine was common to all S. flexneri strains (except serotype 17): -2)-α-L-Rhap-(1-->2)-α-L-Rhap-[branched to α-D-Glcp(1-->3)](1-->3)-α-L-Rhap-(1-->3)-β-D-GlcpNAc-(1-->
BCSDB Structure108654
Proposed functionsLPS plays an important virulence role based on its antiphagocytic and endotoxic properties
Antigenic Nature used to produce antibodiesWhole cells
Carrier NameNil
Conjugation MethodNil
AntibodiesMIgA
Antibody type and classIgA
Assay SystemELISA, In Vivo Protection Experiments
Cross-reactivityThe antibody recognized 5a LPS but failed to react with 2a LPS and Y LPS
Proposed epitopesMlgA was directed against a serotype specific epitope comprising at least the glucosyl residue specifically linked to the central rhamnose of the basic structure of the S. flexneri LPS
IEDB Epitope76703
Proposed UtilityThis Mab protected the animals against subsequent intranasal challenge with S. flexneri serotype 5a
Curator IDAA + AS
Date of Curation30-03-2011
ReferencesPMC2192169


Department of Computational Biology, Indraprastha Institute of Information Technology, Sec - 39A, New Delhi, India - 110020