PolysacDB: A comprehensive database of microbial polysaccharide antigens and their antibodies

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Citation: Aithal A, Sharma A, Joshi S, Raghava GPS, Varshney GC (2012) PolysacDB: A Database of Microbial Polysaccharide Antigens and Their Antibodies. PLoS ONE 7(4): e34613. doi:10.1371/journal.pone.0034613
Total Entries - 1

Entry No. - 1   [TOP]
PolysacDB ID2499
Carbohydrate NameO-polysaccharide   (Drugpedia)
Carbohydrate ClassLipopolysaccharide
MicrobeVibrio cholerae O1 LPS serotype ogawa 395   (NCBI Taxonomy)   (Drugpedia)
Basic StructureIt is a linear unbranched homopolymer of 1,6-linked-D-galactopyranosyl residues.
BCSDB Structure6642
Proposed functionsV. cholerae lipopolysaccharide (LPS), a critical component of the outer membrane that is required for virulence, is a known target for immune responses following infection or immunization. Antibodies specific for V. cholerae LPS are correlated with protection against cholera
Antigenic Nature used to produce antibodiesWhole cells
Carrier NameNil
Conjugation MethodNil
AntibodiesMab 2D6
Antibody type and classIgA
Assay SystemELISA, agglutination assay, indirect immunofluorescence, EM immunogold labeling, invivo protection and immunoblotting
Cross-reactivityThis Mab is specific to V. cholerae Ogawa and did not cross-react with V. cholerae CA401, a virulent strain of the Inaba serotype
Proposed epitopesThe nonreducing terminal residue of Ogawa O-PS is the dominant determinant. The C-2 O-methyl group fits into a somewhat flexible antibody cavity and that hydrogen bonds involving the oxygen and, respectively, the OH at the 2- and 3-position of the sugar moiety as well as the 2'-position in the amide side chain are required. [9446585]
IEDB EpitopeN/A
Proposed UtilityNeonatal mice bearing anti-lipopolysaccharide hybridoma backpack tumors were specifically protected against oral challenge
Curator IDAA + AS
Date of Curation05-06-2011
ReferencesPMC258355


Department of Computational Biology, Indraprastha Institute of Information Technology, Sec - 39A, New Delhi, India - 110020