Browse result page of IndioBioDb
The total number entries retrieved from this search are 49
ID | Resource Name | Resource Description | Resource Link | Journal | Class | Source | Year of Publication | PMID | Corresponding Author | Institute | City | State | Functional Status | Funding Agency | Resource category | Other Repository | |
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1002 | ir-HSP | Improved Recognition of Heat Shock Proteins, Their Families and Sub-types Based On g-Spaced Di-peptide Features and Support Vector Machine | http://cabgrid.res.in:8080/ir-hsp | Frontiers in genetics | Protein Structure | Protein | 2018 | 29379521 | A R Rao | rao.cshl.work@gmail.com | ICAR - Indian Agricultural Statistics Research Institute (IASRI) | New Delhi | New Delhi | ICAR | Functional | Prediction | NA |
1003 | nifPred | Proteome-Wide Identification and Categorization of Nitrogen-Fixation Proteins of Diaztrophs Based on Composition-Transition-Distribution Features Using Support Vector Machine | http://webapp.cabgrid.res.in/nifPred | Frontiers in Microbiology | Protein Function | Protein | 2018 | 29896173 | A R Rao | rao.cshl.work@gmail.com | ICAR - Indian Agricultural Statistics Research Institute (IASRI) | New Delhi | New Delhi | ICAR | Functional | Prediction | NA |
1012 | CbLncRNAdb | Computationally identify lncRNAs based on a proposed index and study their targeted genes | http://cabgrid.res.in/cblncrnadb | Nucleic Acids Research | Genomics | RNA | 2018 | 29753807 | A R Rao | ar.rao@icar.gov.in | ICAR - Indian Agricultural Statistics Research Institute (IASRI) | New Delhi | New Delhi | ICAR | Functional | Database | NA |
1028 | SMMDB | Database for small molecule modulators and their targets involved in neurological diseases | http://bsbe.iiti.ac.in/bsbe/smmdb | Database: The Journal of Biological Databases and Curation | Cheminformatics | Other | 2018 | 30219840 | Amit Kumar | amitk@iiti.ac.in | Indian Institute of Technology (IIT I) | Indore | Madhya Pradesh | IIT | Functional | Database | NA |
1031 | EMSgardeN22 | Database maintaining functional genomics information of Nagina 22, a popular drought- and heat-tolerant upland cultivar | http://14.139.229.201/EMSgardeN22 | Frontiers in plant science | Genomics | Other | 2018 | 30233603 | Amitha M V Sevanthi | amithamithra.nrcpb@gmail.com | ICAR - National Research Centre on Plant Biotechnology (NRCPB) | New Delhi | New Delhi | ICAR | Functional | Database | NA |
1041 | Indian wild Rice database | Detailed information on 614 such diverse wild rice accessions collected from different agro-climatic zones of India, including 46 different morphological descriptors,complete passport data and DNA fingerprints. | http://nksingh.nationalprof.in: 8080/iwrdb/index.jsp | Database: The Journal of Biological Databases and Curation | Protein Structure Protein Function | DNA | 2018 | 29982559 | Ashutosh Singh | ashutosh.bio@gmail.com | Shiv Nadar University Greater | Noida | Uttar Pradesh | Other | Functional | Database | NA |
1043 | pStab | prediction of stable mutants, unfolding curves, stability maps and protein electrostatic frustration | http://pbl.biotech.iitm.ac.in/pStab | Bioinformatics | Protein Function | Protein | 2018 | 29092002 | Athi N Naganathan | athi@iitm.ac.in | Indian Institute of Technology (IIT M) | Chennai | Tamil Nadu | IIT | Functional | Prediction | NA |
1045 | PvaxDB | Helpful in identifying novel protein drug targets, expediting development of new drugs to combat malaria | http://www.scfbio-iitd.res.in/PvaxDB/ | Database: The Journal of Biological Databases and Curation | Cheminformatics | Protein | 2018 | 29688373 | B Jayaram | bjayaram@chemistry.iitd.ac.in | Indian Institute of Technology (IIT D) | New Delhi | New Delhi | IIT | Functional | Database | NA |
1065 | IIKmTA | Intra and inter kingdom miRNA transfer has boosted up the hypothesis about the potential impact of plant or animal miRNAs on each other | http://www.bioinformatics.org/iikmta/ | Interdisciplinary Sciences: Computational Life Sciences | Genomics | RNA | 2018 | 29549628 | Chittabrata Mal | cmal@kol.amity.edu | Amity University | Kolkata | West Bengal | Other | Functional | Database | NA |
1105 | CRISPcut | Tool for designing optimal sgRNAs for CRISPR/Cas9 based experiments in human cells | http://web.iitd.ac.in/crispcut | Genomics | Genomics | RNA | 2018 | 29605634 | Durai Sundar | sundar@dbeb.iitd.ac.in | Indian Institute of Technology (IIT D) | New Delhi | New Delhi | IIT | Functional | Prediction | NA |
1111 | MPDS-DM | Open source disease-specific web portal for diabetes | http://www.mpds-diabetes.in/ | Journal of biomedical informatics | BioDrug | Other | 2018 | 30092360 | G N Sastry | gnsastry@iict.res.in | CSIR - Indian Institute of Chemical Technology (CSIR-IICT) | Hyderabad | Telangana | CSIR | Functional | Database | NA |
1119 | TopicalPdb | Dtaabase of therapeutic peptides given through skin | http://webs.iiitd.edu.in/raghava/topicalpdb/index.php | PLOS One | BioDrug | Protein | 2018 | 29432422 | Gajendra PS Raghava | raghava@iiitd.ac.in | Indraprastha Institute of Information Technology (IIITD) | New Delhi | New Delhi | IIIT | Functional | Database | NA |
1120 | Antifp | In Silico Approach for Prediction of Antifungal Peptides | http://webs.iiitd.edu.in/raghava/antifp | Frontiers in Microbiology | BioDrug | Protein | 2018 | 29535692 | Gajendra PS Raghava | raghava@iiitd.ac.in | Indraprastha Institute of Information Technology (IIITD) | New Delhi | New Delhi | IIIT | Functional | Prediction | NA |
1121 | AntiTbPdb | Experimentally validated anti-tubercular and anti-mycobacterial peptides | http://webs.iiitd.edu.in/raghava/antitbpdb/ | Database: The Journal of Biological Databases and Curation | BioDrug | Protein | 2018 | 29688365 | Gajendra PS Raghava | raghava@iiitd.ac.in | Indraprastha Institute of Information Technology (IIITD) | New Delhi | New Delhi | IIIT | Functional | Database | NA |
1122 | CellppdMOD | Prediction of Cell-Penetrating Potential of Modified Peptides Containing Natural and Chemically Modified Residues | http://webs.iiitd.edu.in/raghava/cellppdmod/ | Frontiers in Microbiology | BioDrug | Protein | 2018 | 29706944 | Gajendra PS Raghava | raghava@iiitd.ac.in | Indraprastha Institute of Information Technology (IIITD) | New Delhi | New Delhi | IIIT | Functional | Prediction | NA |
1123 | PlifePred | In silico approaches for predicting the half-life of natural and modified peptides in blood | http://webs.iiitd.edu.in//raghava/plifepred/ | PLOS One | BioDrug | Protein | 2018 | 29856745 | Gajendra PS Raghava | raghava@iiitd.ac.in | Indraprastha Institute of Information Technology (IIITD) | New Delhi | New Delhi | IIIT | Functional | Prediction | NA |
1124 | VaxinPAD | Computer-aided prediction of antigen presenting cell modulators for designing peptide-based vaccine adjuvants | http://webs.iiitd.edu.in/raghava/vaxinpad/ | Journal of Translational Medicine | BioDrug | Protein | 2018 | 29970096 | Gajendra PS Raghava | raghava@iiitd.ac.in | Indraprastha Institute of Information Technology (IIITD) | New Delhi | New Delhi | IIIT | Functional | Prediction | BTISNet |
1125 | AntiTbpred | Prediction of Antitubercular Peptides From Sequence Information Using Ensemble Classifier and Hybrid Features | http://webs.iiitd.edu.in/raghava/antitbpred/ | Frontiers in Pharmacology | BioDrug | Protein | 2018 | 30210341 | Gajendra PS Raghava | raghava@iiitd.ac.in | Indraprastha Institute of Information Technology (IIITD) | New Delhi | New Delhi | IIIT | Functional | Prediction | NA |
1275 | FlavorDB | Dynamic, user-friendly interface of the resource facilitates exploration of flavor molecules for divergent applications: finding molecules matching a desired flavor or structure; exploring molecules of an ingredient; discovering novel food pairings; finding the molecular essence of food ingredients; associating chemical features with a flavor and more | http://cosylab.iiitd.edu.in/flavordb/ | Nucleic Acids Research | Cheminformatics | Other | 2018 | 29059383 | Ganesh Bagler | bagler@iiitd.ac.in | Indraprastha Institute of Information Technology (IIITD) | New Delhi | New Delhi | IIIT | Functional | Database | NA |
1277 | Terezyme | A predictive algorithm for identification, classification and assignment of broad substrate unit to terpene synthase (TPS) and prenyl transferase (PT) enzymes, known to generate the enormous structural and functional diversity of terpenoid compounds across the plant kingdom | http://nipgr.res.in/terzyme.html | BMC Bioinformatics | Protein Function Cheminformatics | Protein | 2018 | 29339971 | Gitanjali Yadav | gy@nipgr.ac.in | DBT - National Institute of Plant Genome Research (NIPGR) | New Delhi | New Delhi | DBT | Functional | Database | NA |
1293 | LeptoDB | LeptoDB facilitates well-structured knowledge of genomics, proteomics and therapeutic aspects with more than 500 assemblies including 17 complete and 496 draft genomes encoding 1.7 million proteins for 23 Leptospira species with more than 250 serovars comprising pathogenic, intermediate and saprophytic strains | http://leptonet.org.in | Database: The Journal of Biological Databases and Curation | Genomics Vaccinomics | Protein | 2018 | 29905762 | Jayashankar Das | jayshankardas@gmail.com | Gujarat Biotechnology Research Centre | Gandhinagar | Gujrat | Other | Functional | Database | NA |
1303 | Glaucoma Pred | Glaucoma prediction based on Myocilin genotype and phenotype information | http://bioserver1.physics.iisc.ac.in/myocilin | Genomics | Genomics | Other | 2018 | 29665417 | K Sekar | sekar@iisc.ac.in | Indian Institute of Science (IISc) | Bangalore | Karnataka | IISc | Functional | Prediction | NA |
1315 | PDZscape | Encompasses the complete available information on 58,648 PDZ-containing proteins with their known and putative binding partners on one platform | http://www.actrec.gov.in:8080/pdzscape/ | BMC Bioinformatics | Protein Structure | Protein | 2018 | 29699484 | Kakoli Bose | kbose@actrec.gov.in | Advanced Centre for Treatment Research and Education in Cancer (ACTREC) Tata Memorial Centre | Mumbai | Maharashtra | ACTREC | Functional | Database | NA |
1336 | PPIns | A repository of protein-protein interaction sitesbase | http://www.cup.edu.in:99/ppins/home.php | Scientific Reports | Interactome | Protein | 2018 | 30127348 | Mahesh Kulharia | kulharia@gmail.com | Central University of Punjab (CUP) | Bathinda | Punjab | Other | Functional | Database | NA |
1341 | aBiofilm | Harbors a database, a predictor, and the data visualization modules | http://bioinfo.imtech.res.in/manojk/abiofilm/ | Nucleic Acids Research | Cheminformatics | Other | 2018 | 29156005 | Manoj Kumar | manojk@imtech.res.in | CSIR - Institute of Microbial Technology (CSIR-IMTECH) | Chandigarh | Chandigarh | CSIR | Functional | Database | NA |
1342 | HIVprotI | an integrated web based platform for prediction and design of HIV proteins inhibitors | http://bioinfo.imtech.res.in/manojk/hivproti | Frontiers in genetics | Cheminformatics | Protein | 2018 | 29524011 | Manoj Kumar | manojk@imtech.res.in | CSIR - Institute of Microbial Technology (CSIR-IMTECH) | Chandigarh | Chandigarh | CSIR | Functional | Prediction | bio.tools |
1343 | saRNAdb | Contains 2150 manually curated saRNA entries with detailed information about their nucleotide sequences, activities, corresponding target gene, promoter and other experimental data. Besides, saRNA-promoter binding location, predicted saRNA features, tools (off-target, map) and RNAa-related proteins with their interacting partners are provided | http://bioinfo.imtech.res.in/manojk/sarna/ebb.php | Journal of molecular biology | Genomics | RNA | 2018 | 29625201 | Manoj Kumar | manojk@imtech.res.in | CSIR - Institute of Microbial Technology (CSIR-IMTECH) | Chandigarh | Chandigarh | CSIR | Functional | Database | NA |
1363 | MutHTP | Contains information on 183 395 disease-associated and 17 827 neutral mutations in human transmembrane proteins | http://www.iitm.ac.in/bioinfo/MutHTP/ | Bioinformatics | Protein Structure | Protein | 2018 | 29401218 | Michael Gromiha | gromiha@iitm.ac.in | Indian Institute of Technology (IIT M) | Chennai | Tamil Nadu | IIT | Functional | Database | NA |
1393 | PtRFdb | Detailed and comprehensive information is available for each tRF entry | http://www.nipgr.res.in/PtRFdb/. | Database: The Journal of Biological Databases and Curation | Genomics | Other | 2018 | 29939244 | Shailesh Kumar | shailesh@nipgr.ac.in | NIPGR - National Institute of Plant Genome Research | New Delhi | New Delhi | NIPGR | Functional | Database | NA |
1396 | miRway | Collects an exhaustive list of miRNA-pathway association entries for 76 critical disease conditions by reviewing 663 published articles | http://www.mirway.iitkgp.ac.in/ | Database: The Journal of Biological Databases and Curation | Genomics | RNA | 2018 | 29688364 | Nishant Chakravorty | nishant@smst.iitkgp.ernet.in | Indian Institute of Technology (IIT KGP) | Kharagpur | West Bengal | IIT | Functional | Database | NA |
1406 | HYPO | A database of hypothetical human proteins | http://www.bioclues.org/hypo2 | Protein and peptide letters | Protein Structure | Protein | 2018 | 30152276 | Pawan Dhar | pawandhar@gmail.com | Jawaharlal Nehru University (JNU) | New Delhi | New Delhi | JNU | Functional | Database | NA |
1410 | ESCC ATLAS | Facilitates the exploration and the analysis of genes among different populations | http://www.esccatlas.org | Scientific Reports | Genomics | DNA | 2018 | 30143675 | Prashantha Hebbar Manoj Kumar Kashyap | phebbar@mbiomics.org manojkkashyap@gmail.com | Manipal University | Manipal | Karnataka | Other | Functional | Database | NA |
1444 | dbSweet | Design mutational experiments and simulation studies that will aid to advance our understanding of the physiological role of SWEET homologs | http://bioinfo.iitk.ac.in/bioinfo/dbsweet/Home | Journal of molecular biology | Protein Function | Other | 2018 | 29665371 | Ramasubbu Sankararamakrishnan | sankar@iitk.ac.in | Indian Institute of Technology (IIT K) | Kanpur | Uttar Pradesh | IIT | Functional | Database | NA |
1456 | FilTer BaSe | Hosts a database that enables efficient searching the chemical space of around 348,000 compounds on the basis of physicochemical and substructure properties | http://bioinfo.net.in/filterbase/ | Journal of molecular graphics and modeling | Cheminformatics | Other | 2018 | 29328995 | Rohan J Meshram | rohan@bioinfo.net.in | University of Pune | Pune | Maharashtra | Other | Functional | Database | NA |
1466 | KELM-CPPpred | Kernel Extreme Learning Machine Based Prediction Model for Cell-Penetrating Peptides | http://sairam.people.iitgn.ac.in/KELM-CPPpred.html | Journal of proteome research | BioDrug | Protein | 2018 | 30032609 | Sairam S Mallajosyula | msairam@iitgn.ac.in | Indian Institute of Technology (IIT Gn) | Gandhinagar | Gujrat | IIT | Functional | Prediction | NA |
1469 | wwPDB | Atomic co-ordinates and structure factors for I249T mutant of human CTSK (codes 5Z5O) have been deposited in the Protein Data Bank | http://wwpdb.org/ | The FEBS journal | Protein Structure Genomics | Protein | 2018 | 30199612 | Sampa Biswas | sampa.sinp@gmail.com | Saha Institute of Nuclear Physics | Kolkata | West Bengal | Other | Functional | Database | NA |
1471 | PanGFR-HM | A Dynamic Web Resource for Pan-Genomic and Functional Profiling of Human Microbiome With Comparative Features | http://www.bioinfo.iicb.res.in/pangfr-hm/ | Frontiers in Microbiology | Genomics | DNA | 2018 | 30349509 | Sandip Paul | sandippaul@iicb.res.in | CSIR - Indian Institute of Chemical Biology (CSIR-IICB) | Kolkata | West Bengal | CSIR | Functional | Database | NA |
1476 | PHPT Registry | Primary hyperparathyroidism: insights from the Indian PHPT registry | http://www.indianphptregistry.com/ | Journal of bone and mineral metabolism | Genomics | Other | 2018 | 28364324 | Sanjay Kumar Bhadada | bhadadask@rediffmail.com | Postgraduate Institute of Medical Education and Research (PGIMER) | Chandigarh | Chandigarh | Other | Functional | Prediction | NA |
1484 | Oxypred2 | Harnessing the evolutionary information on oxygen binding proteins through Support Vector Machines based modules | http://bioinfo.imtech.res.in/servers/muthu/oxypred2/home.html | BMC Research Notes | Protein Function | Protein | 2018 | 29751818 | Selvaraj Muthukrishnan Munish Puri | muthu@imtech.res.in mpuri@pbi.ac.in | CSIR - Institute of Microbial Technology (CSIR-IMTECH) | Chandigarh | Chandigarh | CSIR | Functional | Prediction | NA |
1485 | Netpath | Manually curated resources of pathways in humans | http://www.netpath.org/pathways?path_id=NetPath_172 | Journal of cell communication and signalling | Interactome | Other | 2018 | 30084000 | Shaida Andrabi Yashwanth Subbannayya | shaida.andrabi@uok.edu.in yashwanth@yenepoya.edu.in | University of Kashmir | Kashmir | Jammu and Kashmir | Other | Functional | Database | NA |
1487 | PVsiRNAdb | A database for plant exclusive virus-derived small interfering RNAs | http://www.nipgr.res.in/PVsiRNAdb | Database: The Journal of Biological Databases and Curation | Genomics | RNA | 2018 | 30307523 | Shailesh Kumar | shailesh@nipgr.ac.in | DBT - National Institute of Plant Genome Research (NIPGR) | New Delhi | New Delhi | DBT | Functional | Database | NA |
1497 | ILDgenDB | Facilitates graphical view of predicted DCGs-SNPs/miRNAs and literature associated DCGs-ILDs interactions for each ILD to facilitate efficient data interpretation. Outcomes of analyses suggested the significant involvement of immune system and defense mechanisms in ILDs pathogenesis. | http://14.139.240.55/ildgendb/index.php | Database: The Journal of Biological Databases and Curation | Genomics | RNA | 2018 | 29897484 | Smriti Mishra | smriti.mishra1906@gmail.com | Jaypee University of Information Technology (JUIT) | Solan | Himachal Pradesh | JUIT | Functional | Database | NA |
1533 | FrameOUT | A method for analysing frame shift mutations | http://bioinfoindia.org/frameout/ | International Journal for Computational Biology | Genomics | Other | 2018 | NA | Tiratha Raj Singh | tiratharaj@gmail.com | Jaypee University of Information Technology (JUIT) | Solan | Himachal Pradesh | JUIT | Functional | Prediction | NA |
1546 | CellAtlasSearch | CellAtlasSearch features over 300 000 reference expression profiles including both bulk and single-cell data | http://www.cellatlassearch.com/ | Nucleic Acids Research | Genomics | DNA | 2018 | 29788498 | Vibhor Kumar Debarka Sengupta | vibhor@iiitd.ac.in debarka@iiitd.ac.in | Indraprastha Institute of Information Technology (IIITD) | New Delhi | New Delhi | IIIT | Functional | Database | NA |
1562 | AromaDb | A Database of Medicinal and Aromatic Plant's Aroma Molecules With Phytochemistry and Therapeutic Potentials | http://bioinfo.cimap.res.in/aromadb/ | Frontiers in plant science | Cheminformatics | Other | 2018 | 30150996 | Feroz Khan | f.khan@cimap.res.in | CSIR - Central Institute of Medicinal and Aromatic Plants (CSIR-CIMAP) | Lucknow | Uttar Pradesh | CSIR | Non-Functional | Database | NA |
1572 | BlaPred | Predicting and classifying β-lactamase using a 3-tier prediction system via Chou's general PseAAC | http://proteininformatics.org/mkumar/blapred | Journal of theoretical biology | Protein Function | Other | 2018 | 30138632 | Manish Kumar | manish@south.du.ac.in | University of Delhi (DU) South Campus | New Delhi | New Delhi | DU | Non-Functional | Prediction | NA |
1575 | SubMitoPred | Proteome-wide prediction and annotation of mitochondrial and sub-mitochondrial proteins by incorporating domain information | http://proteininformatics.org/mkumar/submitopred/ | Mitochondrion | Protein Function | Protein | 2018 | 29032233 | Manish Kumar | manish@south.du.ac.in | University of Delhi (DU) South Campus | New Delhi | New Delhi | DU | Non-Functional | Prediction | NA |
1576 | ZincBinder | Prediction of zinc binding sites in proteins using sequence derived information | http://proteininformatics.org/mkumar/znbinder/ | Journal of biomolecular structure and dynamics | Interactome | Protein | 2018 | 29241411 | Manish Kumar | manish@south.du.ac.in | University of Delhi (DU) South Campus | New Delhi | New Delhi | DU | Non-Functional | Prediction | NA |
1578 | MODII | Developed with a holistic approach for collecting information about phenomic and genomic information of agriculturally important insects | http://cib.res.in/database.php | Bioinformation | Genomics | DNA | 2018 | 29618898 | Maria Pratheepa | mpratheepa@gmail.com | ICAR - National Bureau of Agricultural Insect Resources (NBAIR) | Bangalore | Karnataka | ICAR | Non-Functional | Database | NA |