Browse result page of IndioBioDb
The total number entries retrieved from this search are 50
| ID | Resource Name | Resource Description | Resource Link | Journal | Class | Source | Year of Publication | PMID | Corresponding Author | Institute | City | State | Functional Status | Funding Agency | Resource category | Other Repository | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1004 | iAMPred | Predicting antimicrobial peptides with improved accuracy by incorporating the compositional, physico-chemical and structural features into Chou's general PseAAC | http://cabgrid.res.in:8080/amppred/ | Scientific Reports | BioDrug | Protein | 2017 | 28205576 | A R Rao | rao.cshl.work@gmail.com | ICAR - Indian Agricultural Statistics Research Institute (IASRI) | New Delhi | New Delhi | ICAR | Functional | Prediction | NA |
| 1005 | DIRProt | A computational approach for discriminating insecticide resistant proteins from non-resistant proteins | http://cabgrid.res.in:8080/dirprot/ | BMC Bioinformatics | Protein Function | Protein | 2017 | 28340571 | A R Rao | rao.cshl.work@gmail.com | ICAR - Indian Agricultural Statistics Research Institute (IASRI) | New Delhi | New Delhi | ICAR | Functional | Prediction | NA |
| 1032 | RiceMetaSys | Provides comprehensive information on salt responsive genes (SRGs) and drought responsive genes (DRGs) across genotypes, crop development stages and tissues, identified from multiple microarray datasets | http://14.139.229.201 | BMC Bioinformatics | Genomics Protein Function | DNA | 2017 | 28964253 | Amitha Mithra S V | amithamithra.nrcpb@gmail.com | ICAR - National Research Centre on Plant Biotechnology (NRCPB) | New Delhi | New Delhi | ICAR | Functional | Database | NA |
| 1040 | dbGAPs | Contains annotation for 202 manually curated genes associated with psoriasis and its subtypes with cross-references | http://www.bmicnip.in/dbgaps/ | Genomics | Genomics Vaccinomics | DNA | 2017 | 29031638 | Arun Kumar Jain | akjain@instpath.gov.in | ICMR - National Institute of Pathology (NIP) | New Delhi | New Delhi | ICMR | Functional | Database | NA |
| 1042 | TM-Aligner | Based on Wu-Manber and dynamic string matching algorithm which has significantly improved its accuracy and speed of multiple sequence alignment | http://lms.snu.edu.in/TM-Aligner/ | Scientific Reports | Protein Function | DNA | 2017 | 28970546 | Ashutosh Singh | ashutosh.singh@snu.edu.in | Shiv Nadar University Greater | Noida | Uttar Pradesh | Other | Functional | Database | NA |
| 1046 | Intercalate | A DNA intercalation methodology for an efficient prediction of ligand binding pose and energetics | http://www.scfbio-iitd.res.in/intercalate/ | Bioinformatics | Protein Function Cheminformatics | DNA | 2017 | 28073762 | B Jayaram | bjayaram@chemistry.iitd.ac.in | Indian Institute of Technology (IIT D) | New Delhi | New Delhi | IIT | Functional | Prediction | NA |
| 1064 | TiD | Standalone software for mining putative drug targets from bacterial proteome | http://bmicnip.in/TiD/ | Genomics | Protein Structure Protein Function | Protein | 2017 | 27856224 | Chandra Shekhar Rai | csrai@ipu.ac.in | Guru Gobind Singh Indraprastha University | New Delhi | New Delhi | Other | Functional | Prediction | NA |
| 1069 | RiPPMiner | A bioinformatics resource for deciphering chemical structures of RiPPs based on prediction of cleavage and cross-links | http://www.nii.ac.in/rippminer.html | Nucleic Acids Research | Cheminformatics | Other | 2017 | 28499008 | Debasisa Mohanty | deb@nii.res.in | DBT - National Institute of Immunology (NII) | New Delhi | New Delhi | DBT | Functional | Prediction | NA |
| 1077 | CAPi | Computational Model for Apicoplast Inhibitors Prediction Against Plasmodium Parasite | http://deepaklab.com/capi | Curret computer aided drug design | Cheminformatics | Other | 2017 | 28260517 | Deepak Singla | deepkumar1983@gmail.com | ICAR - Indian Agricultural Statistics Research Institute (IASRI) | New Delhi | New Delhi | ICAR | Functional | Prediction | NA |
| 1078 | APMicroDB | Incorporated the primer information derived from Primer3 software of the 2504 bp flanking region of the identified marker | http://deepaklab.com/aphidmicrodb | Genomics data | Protein Function | Other | 2017 | 28413782 | Deepak Singla | deepkumar1983@gmail.com | ICAR - Indian Agricultural Statistics Research Institute (IASRI) | New Delhi | New Delhi | ICAR | Functional | Database | NA |
| 1083 | APA | A gene expression dataset analysis tool for identification and prioritization of differentially regulated and network rewired pathways | http://bioinfo.icgeb.res.in/APA/ | Scientific Reports | Interactome | Other | 2017 | 28084397 | Dinesh Gupta | dinesh@icgeb.res.in | DBT - International Centre for Genetic Engineering and Biotechnology (ICGEB) | New Delhi | New Delhi | DBT | Functional | Prediction | NA |
| 1084 | PRmePRed | A protein arginine methylation prediction tool | http://bioinfo.icgeb.res.in/PRmePRed/ | PLOS One | Protein Function | Protein | 2017 | 28813517 | Dinesh Gupta | dinesh@icgeb.res.in | DBT - International Centre for Genetic Engineering and Biotechnology (ICGEB) | New Delhi | New Delhi | DBT | Functional | Prediction | bio.tools |
| 1097 | VmTDB | Development of transcriptome based web genomic resources of yellow mosaic disease in Vigna mungo | http://webtom.cabgrid.res.in/vmtdb/ | Physiology and molecular biology of plants: An international journal functional plant biology | Genomics | DNA | 2017 | 29158627 | Dinesh Kumar | dinesh.kumar@icar.gov.in | ICAR - Indian Agricultural Statistics Research Institute (IASRI) | New Delhi | New Delhi | ICAR | Functional | Prediction | NA |
| 1098 | TaSSR | Chromosome-wise SSR calling for all the three sub genomes along with choice of motif types is provided in addition to the primer generation for desired marker | http://webtom.cabgrid.res.in/wheatssr/ | Frontiers in plant science | Genomics | DNA | 2017 | 29234333 | Dinesh Kumar | dinesh.kumar@icar.gov.in | ICAR - Indian Council of Agricultural Research | New Delhi | New Delhi | ICAR | Functional | Database | NA |
| 1103 | MiSNPDb | A Web-Based Genomic Resources of Tropical Ecology Fruit Mango (Mangifera Indica L.) for Phylogeography and Varietal Differentiation | http://webtom.cabgrid.res.in/mangosnps/ | Scientific Reports | Genomics | Other | 2017 | 29097776 | Dinesh Kumar | dinesh.kumar@icar.gov.in | ICAR - Indian Council of Agricultural Research | New Delhi | New Delhi | ICAR | Functional | Database | NA |
| 1104 | MSDB | Database is by far the most exhaustive resource to access and analyze SSR data of multiple species | http://tdb.ccmb.res.in/msdb | Genome biology and evolution | Genomics | Other | 2017 | 28854643 | Divya Tej Sowpati | tej@ccmb.res.in | CSIR - Centre for Cellular and Molecular Biology (CSIR-CCMB) | Hyderabad | Telangana | CSIR | Functional | Database | bio.tools |
| 1126 | IL10pred | Prediction of Interleukin-10 inducing peptides | http://webs.iiitd.edu.in/raghava/il10pred/ | Scientific Reports | BioDrug | Protein | 2017 | 28211521 | Gajendra PS Raghava | raghava@iiitd.ac.in | Indraprastha Institute of Information Technology (IIITD) | New Delhi | New Delhi | IIIT | Functional | Prediction | NA |
| 1127 | CancerCSP | Gene expression-based biomarkers for discriminating early and late stage of clear cell renal cancer | http://webs.iiitd.edu.in/raghava/cancercsp/ | Scientific Reports | Genomics | DNA | 2017 | 28349958 | Gajendra PS Raghava | raghava@iiitd.ac.in | Indraprastha Institute of Information Technology (IIITD) | New Delhi | New Delhi | IIIT | Functional | Prediction | NA |
| 1128 | CancerPDF | Comprehensive database of endogenous peptides detected in the human biofluids | http://webs.iiitd.edu.in/raghava/cancerpdf/ | Scientific Reports | BioDrug | Protein | 2017 | 28473704 | Gajendra PS Raghava | raghava@iiitd.ac.in | Indraprastha Institute of Information Technology (IIITD) | New Delhi | New Delhi | IIIT | Functional | Database | NA |
| 1129 | imrna | Computational Prediction of the Immunomodulatory Potential of RNA Sequences | http://webs.iiitd.edu.in/raghava/imrna/ | Methods in Molecular Biology | Vaccinomics | RNA | 2017 | 28730433 | Gajendra PS Raghava | raghava@iiitd.ac.in | Indraprastha Institute of Information Technology (IIITD) | New Delhi | New Delhi | IIIT | Functional | Prediction | BTISNet |
| 1130 | THPdb | Manually curated repository of Food and Drug Administration (FDA) approved therapeutic peptides and proteins | http://webs.iiitd.edu.in/raghava/thpdb/ | PLOS One | Vaccinomics BioDrug | Protein | 2017 | 28759605 | Gajendra PS Raghava | raghava@iiitd.ac.in | Indraprastha Institute of Information Technology (IIITD) | New Delhi | New Delhi | IIIT | Functional | Database | BTISNet |
| 1278 | KIXBAESE | Provides useful information about critical aspects of KIX domains such as their intrinsic disorder, hydrophobicity profiles, functional classification and annotation based on domain architectures | http://www.nipgr.res.in/kixbase/home.php | Scientific Reports | Protein Function | Other | 2017 | 29097748 | Gitanjali Yadav | gy@nipgr.ac.in | DBT - National Institute of Plant Genome Research (NIPGR) | New Delhi | New Delhi | DBT | Functional | Database | NA |
| 1281 | Coffee Genome Hub | It had 22 matches to different pectate lyase genes mapped on 9 of the 11 pseudochromosomes, the top match being Cc07_g00190 Pectate lyase | http://coffee-genome.org/ | 3 Biotech | Genomics | DNA | 2017 | 28444590 | H L Sreenath | sreenath.lakkanna@gmail.com | Central Coffee Research Institute (CCRI) | Mysore | Karnataka | Other | Functional | Database | bio.tools |
| 1300 | ImmunemiR | Database of Prioritized Immune miRNA Disease Associations and its Interactome | http://www.biominingbu.org/immunemir/ | MicroRNA (Shariqah , United Arab Emirates) | Interactome | Other | 2017 | 28124611 | Jeyakumar Natarajan | epub@benthamscience.org | Bharathiar University | Coimbatore | Tamil Nadu | Other | Functional | Database | NA |
| 1316 | 1-CMDb | Platform to interrogate its association with a host of human disorders | http://slsdb.manipal.edu/ocm | Public health genomics | Genomics | Other | 2017 | 28511181 | Kapaettu Satyamoorthy | ksatyamoorthy@manipal.edu | Manipal University | Manipal | Karnataka | Other | Functional | Database | NA |
| 1344 | AVCPred | An integrated web server for prediction and design of antiviral compounds | http://crdd.osdd.net/servers/avcpred | Chemical biology and drug design | Cheminformatics | Other | 2017 | 27490990 | Manoj Kumar | manojk@imtech.res.in | CSIR - Institute of Microbial Technology (CSIR-IMTECH) | Chandigarh | Chandigarh | CSIR | Functional | Prediction | NA |
| 1345 | ASPsiRNA | A Resource of ASP-siRNAs Having Therapeutic Potential for Human Genetic Disorders and Algorithm for Prediction of Their Inhibitory Efficacy | http://crdd.osdd.net/servers/aspsirna/ | G3 bethesda | Genomics | RNA | 2017 | 28696921 | Manoj Kumar | manojk@imtech.res.in | CSIR - Institute of Microbial Technology (CSIR-IMTECH) | Chandigarh | Chandigarh | CSIR | Functional | Prediction | NA |
| 1362 | vhfRNAi | A Web-Platform for Analysis of Host Genes Involved in Viral Infections Discovered by Genome Wide RNAi Screens | http://bioinfo.imtech.res.in/manojk/vhfrnai | Molecular BioSystems | Genomics | DNA | 2017 | 28561835 | Manoj Kumar | manojk@imtech.res.in | CSIR - Institute of Microbial Technology (CSIR-IMTECH) | Chandigarh | Chandigarh | CSIR | Functional | Prediction | NA |
| 1364 | APPLE | Importance of functional groups in predicting the activity of small molecule inhibitors for Bcl-2 and Bcl-xL | http://www.iitm.ac.in/bioinfo/APPLE/ | Chemical biology and drug design | Cheminformatics | Protein | 2017 | 28112863 | Michael Gromiha | gromiha@iitm.ac.in | Indian Institute of Technology (IIT M) | Chennai | Tamil Nadu | IIT | Functional | Prediction | NA |
| 1365 | PROXiMATE | Database of thermodynamic data for more than 6000 missense mutations in 174 heterodimeric protein-protein complexes, supplemented with interaction network data from STRING database, solvent accessibility, sequence, structural and functional information, experimental conditions and literature information | http://www.iitm.ac.in/bioinfo/PROXiMATE/ | Bioinformatics | Protein Structure | Protein | 2017 | 28498885 | Michael Gromiha | gromiha@iitm.ac.in | Indian Institute of Technology (IIT M) | Chennai | Tamil Nadu | IIT | Functional | Database | NA |
| 1412 | TFIS | Tool for Detection of Transcription Factor Binding Sites | http://tfistool.appspot.com/ | Interdisciplinary Sciences: Computational Life Sciences | Genomics | Other | 2017 | 27052996 | Priyanka Narad | pnarad@amity.edu | Amity University | Noida | Uttar Pradesh | Other | Functional | Prediction | NA |
| 1414 | OCDD | Investigate the genes associated with comorbidity | https://www.isical.ac.in/~systemsbiology/OCDD/home.php | Biodata Mining | Genomics | DNA | 2017 | 29201145 | Rajat K De | rajat@isical.ac.in | Indian Statistical Institute (ISI) | Kolkata | West Bengal | ISI | Functional | Database | NA |
| 1447 | PRDBv2 | A non-redundant protein-RNA docking benchmark version 2.0 | http://www.csb.iitkgp.ac.in/applications/PRDBv2 | Proteins | Protein Function | RNA | 2017 | 27862282 | Ranjit Prasad Bahadur | r.bahadur@hijli.iitkgp.ernet.in | Indian Institute of Technology (IIT KGP) | Kharagpur | West Bengal | IIT | Functional | Prediction | NA |
| 1461 | DbTFLC | Data repository and analytical platform for systematic collection, curation of TFs and their interacting partners | http://www.vit.ac.in/files/database/Home.php | Journal of cellular biochemistry | Protein Function Interactome | Other | 2017 | 29236308 | S Sajitha Lulu | ssajithalulu@vit.ac.in | VIT University | Vellore | Tamil Nadu | VIT | Functional | Database | NA |
| 1470 | GABD | Finding optimum width of discretization for gene expressions using functional annotations | http://www.sampa.droppages.com/GABD.html | Computers in biology and medicine | Genomics | DNA | 2017 | 28941844 | Sampa Misra | sampamisra1989@gmail.com | Indian Statistical Institute (ISI) | Kolkata | West Bengal | ISI | Functional | Prediction | NA |
| 1500 | T2DiACoD | Gene Atlas of Type 2 Diabetes Mellitus Associated Complex Disorders | http://t2diacod.igib.res.in/ | Scientific Reports | Interactome | Other | 2017 | 28761062 | Srinivasan Ramachandran | ramu@igib.res.in | CSIR - Institute of Genomics and Integrative Biology (CSIR-IGIB) | New Delhi | New Delhi | CSIR | Functional | Database | NA |
| 1510 | MYCbase | Collection of experimentally supported functional sites in Myc that can influence the biological cellular processes | http://bicresources.jcbose.ac.in/ssaha4/mycbase | BMC Bioinformatics | Protein Function | Other | 2017 | 28454513 | Sudipto Saha | ssaha4@gmail.com | Bose Institute | Kolkata | West Bengal | Other | Functional | Database | NA |
| 1511 | PPIMpred | Allows high-throughput screening of small molecules for targeting specific protein-protein interactions, namely Mdm2/P53, Bcl2/Bak and c-Myc/Max | http://bicresources.jcbose.ac.in/ssaha4/PPIMpred/ | Royal society open science | Interactome | Protein | 2017 | 28484602 | Sudipto Saha | ssaha4@jcbose.ac.in | Bose Institute | Kolkata | West Bengal | Other | Functional | Database | NA |
| 1513 | SWII/SNF Infobase | Database hosts information on 27 distinct SWI/SNF subunits from 20 organisms spanning a wide evolutionary range of eukaryotes | http://scbt.sastra.edu/swisnfdb/index.php | PLOS One | Protein Function | Other | 2017 | 28961249 | Suma Mohan S | swisnfdb@gmail.com | SASTRA University | Thanjavur | Tamil Nadu | Other | Functional | Database | NA |
| 1522 | 3D-NuS | A Web Server for Automated Modeling and Visualization of non-canonical 3-Dimensional Nucleic Acid Structures | http://iith.ac.in/3dnus/ | Journal of molecular biology | Protein Structure | DNA | 2017 | 28652006 | Thenmalarchelvi Rathinavelan | tr@iith.ac.in | Indian Institute of Technology (IIT H) | Hyderabad | Telangana | IIT | Functional | Prediction | NA |
| 1548 | BioFuelDB | Comprehensive data of curated biofuel enzymes, their novel homologs identified from diverse metagenomes, and the hybrid prediction tool Benz are presented as a web server which can be used for the prediction of biofuel enzymes from genomic and metagenomic datasets | http://metabiosys.iiserb.ac.in/biofueldb/ | Peer J | Protein Structure | Other | 2017 | 28875065 | Vineet K Sharma | vineetks@iiserb.ac.in | Indian Institute of Science Education and Research (IISERB) | Bhopal | Madhya Pradesh | IISER | Functional | Database | NA |
| 1549 | IL17eScan | Helps in the identification of IL17 using machine-learning approaches | http://metabiosys.iiserb.ac.in/IL17eScan/guide.php | Frontiers in Immunology | BioDrug | Protein | 2017 | 29163505 | Vineet K Sharma | vineetks@iiserb.ac.in | Indian Institute of Science Education and Research (IISERB) | Bhopal | Madhya Pradesh | IISER | Functional | Prediction | NA |
| 1559 | BOSS | Resource of experimentally validated breast oncogenic siRNAs | http://bioinformatics.cimap.res.in/sharma/boss/ | Scientific Reports | Genomics Vaccinomics | RNA | 2017 | 28821760 | Ashok Sharma | ashoksharma@cimap.res.in | CSIR - Central Institute of Medicinal and Aromatic Plants (CSIR-CIMAP) | Lucknow | Uttar Pradesh | CSIR | Non-Functional | Database | NA |
| 1564 | MPDS | A web server designed for in silico drug discovery towards M. tuberculosis. | http://mpds.osdd.net/ | SAR and QSAR in Environmental Research | BioDrug | Other | 2017 | 29206500 | G N Sastry | gnsastry@iict.res.in | CSIR - Indian Institute of Chemical Technology (CSIR-IICT) | Hyderabad | Telangana | CSIR | Non-Functional | Database | NA |
| 1573 | ERPred | Prediction of endoplasmic reticulum resident proteins using fragmented amino acid composition and support vector machine | http://proteininformatics.org/mkumar/erpred/index.html | Peer J | Protein Function | Protein | 2017 | 28890846 | Manish Kumar | manish@south.du.ac.in | University of Delhi (DU) South Campus | New Delhi | New Delhi | DU | Non-Functional | Prediction | NA |
| 1577 | miPepBase | Contains comprehensive information about mimicry proteins and peptides of both host (and model organism) and pathogen | http://proteininformatics.org/mkumar/mipepbase | Frontiers in Microbiology | Protein Function | Protein | 2017 | 29109711 | Manish Kumar | manish@south.du.ac.in | University of Delhi (DU) South Campus | New Delhi | New Delhi | DU | Non-Functional | Database | NA |
| 1580 | SVMDLF | A novel R-based Web application for prediction of dipeptidyl peptidase 4 inhibitors | http://www.cdri.res.in/svmdlf/ | Chemical biology and drug design | Cheminformatics | Protein | 2017 | 28585374 | Mohammad Imran Siddiqi | mi_siddiqi@cdri.res.in | CSIR - Central Drug Research Institute (CSIR-CDRI) | Lucknow | Uttar Pradesh | CSIR | Non-Functional | Prediction | NA |
| 1582 | miRnalyze | An interactive database linking tool to unlock intuitive microRNA regulation of cell signaling pathways | http://www.mirnalyze.in | Database: The Journal of Biological Databases and Curation | Genomics | RNA | 2017 | 28365733 | Nishant Chakravorty | nishant@smst.iitkgp.ernet.in | Indian Institute of Technology (IIT KGP) | Kharagpur | West Bengal | IIT | Non-Functional | Database | NA |
| 1587 | A2MDB | Curated compendium of information on Aspergillus & its secondary metabolome | http://www.iictindia.org/A2MDB | Scientific Reports | Genomics | Other | 2017 | 28779078 | Suryanarayana Murty Upadhyayula Ramars Amanchy | director@niperguwahati.ac.in ramars@iict.res.in | National Institute of Pharmaceutical Education and Research (NIPER) Guwahati CSIR-Indian Institute of Chemical Technology (CSIR-IIC | Guwahati Hyderabad | Assam Telangana | NIPER | Non-Functional | Database | NA |
| 1594 | Antiinflam | Prediction of anti-inflammatory proteins/peptides | http://metagenomics.iiserb.ac.in/antiinflam/ | Journal of Translational Medicine | BioDrug | Protein | 2017 | 28057002 | Vineet K Sharma | vineetks@iiserb.ac.in | Indian Institute of Science Education and Research (IISERB) | Bhopal | Madhya Pradesh | IISER | Functional | Prediction | NA |