Browse result page of IndioBioDb
The total number entries retrieved from this search are 69
| ID | Resource Name | Resource Description | Resource Link | Journal | Class | Source | Year of Publication | PMID | Corresponding Author | Institute | City | State | Functional Status | Funding Agency | Resource category | Other Repository | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1006 | MaLDoSS | Prediction of donor splice sites using random forest with a new sequence encoding approach | http://cabgrid.res.in:8080/maldoss | Biodata Mining | Genomics | Other | 2016 | 26807151 | A R Rao | rao.cshl.work@gmail.com | ICAR - Indian Agricultural Statistics Research Institute (IASRI) | New Delhi | New Delhi | ICAR | Functional | Prediction | NA |
| 1007 | HSplice | Identification of Donor Splice Sites Using Support Vector Machine: A Computational Approach Based on Positional, Compositional and Dependency Features | http://cabgrid.res.in:8080/HSplice | Algorithms for molecular biology: AMB | Genomics | Other | 2016 | 27252772 | A R Rao | rao.cshl.work@gmail.com | ICAR - Indian Agricultural Statistics Research Institute (IASRI) | New Delhi | New Delhi | ICAR | Functional | Prediction | NA |
| 1008 | PreDOSS | A computational approach for prediction of donor splice sites with improved accuracy | http://cabgrid.res.in:8080/predoss | Journal of theoretical biology | Genomics | Other | 2016 | 27302911 | A R Rao | rao.cshl.work@gmail.com | ICAR - Indian Agricultural Statistics Research Institute (IASRI) | New Delhi | New Delhi | ICAR | Functional | Prediction | NA |
| 1009 | SPIDBAR | Identification of species based on DNA barcode using k-mer feature vector and Random forest classifier | http://cabgrid.res.in:8080/spidbar/ | Gene | Genomics | DNA | 2016 | 27393648 | A R Rao | rao.cshl.work@gmail.com | ICAR - Indian Agricultural Statistics Research Institute (IASRI) | New Delhi | New Delhi | ICAR | Functional | Prediction | NA |
| 1015 | Fish Karyome Version 2.1 | A Chromosome Database of Fishes and Other Aquatic Organisms | http://mail.nbfgr.res.in/Fish_Karyome | Database: The Journal of Biological Databases and Curation | Genomics | DNA | 2016 | 26980518 | Ajey Kumar Pathak | pathakajey@rediffmail.com | ICAR - National Bureau of Fish Genetic Resources (NBFGR) | Lucknow | Uttar Pradesh | ICAR | Functional | Database | NA |
| 1025 | TMC-SNPPdb | An Indian Germline Variant Database Derived From Whole Exome Sequences | http://www.actrec.gov.in/pi-webpages/AmitDutt/TMCSNP/TMCSNPdp.html | Database: The Journal of Biological Databases and Curation | Genomics | Other | 2016 | 27402678 | Amit Dutt | adutt@actrec.gov.in | Advanced Centre for Treatment Research and Education in Cancer (ACTREC) Tata Memorial Centre | Mumbai | Maharashtra | ACTREC | Functional | Database | NA |
| 1029 | NALDB | Nucleic acid ligand database for small molecules targeting nucleic acid | http://bsbe.iiti.ac.in/bsbe/naldb/HOME.php | Database: The Journal of Biological Databases and Curation | Cheminformatics | DNA | 2016 | 26896846 | Amit Kumar | amitk@iiti.ac.in | Indian Institute of Technology (IIT I) | Indore | Madhya Pradesh | IIT | Functional | Database | NA |
| 1030 | G4IPDB | Database that contains detailed information about proteins interacting with nucleic acids that forms G-quadruplex structures | http://bsbe.iiti.ac.in/bsbe/ipdb/index.php | Scientific Reports | Interactome | Protein | 2016 | 27905517 | Amit Kumar | amitk@iiti.ac.in | Indian Institute of Technology (IIT I) | Indore | Madhya Pradesh | IIT | Functional | Database | NA |
| 1038 | dPABBs | A Novel in silico Approach for Predicting and Designing Anti-biofilm Peptides | http://ab-openlab.csir.res.in/abp/antibiofilm/ | Scientific Reports | BioDrug | Protein | 2016 | 26912180 | Anshu Bhardwaj | anshub@osdd.net | CSIR - Open Source Drug Discovery Unit (CSIR-OSDD) | New Delhi | New Delhi | CSIR | Functional | Prediction | NA |
| 1047 | ProTSAV | A protein tertiary structure analysis and validation server | http://www.scfbio-iitd.res.in/software/proteomics/protsav.jsp | Bioichimica et biophysics acta | Protein Structure | Protein | 2016 | 26478257 | B Jayaram | bjayaram@chemistry.iitd.ac.in | Indian Institute of Technology (IIT D) | New Delhi | New Delhi | IIT | Functional | Prediction | BTISNet |
| 1063 | VDAP-GUI | A user-friendly pipeline for variant discovery and annotation of raw next-generation sequencing data | https://sourceforge.net/projects/vdapgui/ | 3 Biotech | Genomics | Other | 2016 | 28330138 | Chaitanya G Joshi | cgjoshi@aau.in | Anand Agricultural University | Anand | Gujrat | Other | Functional | Prediction | NA |
| 1070 | modPDZpep | A web resource for structure based analysis of human PDZ-mediated interaction networks | http://202.54.226.235/modPDZpep.html | Biology Direct | Interactome | Other | 2016 | 27655048 | Debasisa Mohanty | deb@nii.res.in | DBT - National Institute of Immunology (NII) | New Delhi | New Delhi | DBT | Functional | Prediction | NA |
| 1099 | FishAMP | Development of Antimicrobial Peptide Prediction Tool for Aquaculture Industries | http://webapp.cabgrid.res.in/fishamp/ | Probiotics and antimicrobial proteins | BioDrug | Protein | 2016 | 27141850 | Dinesh Kumar | dineshkumarbhu@gmail.com | ICAR - Indian Agricultural Statistics Research Institute (IASRI) | New Delhi | New Delhi | ICAR | Functional | Prediction | NA |
| 1106 | Zif-Predict IHBE | Exploiting the recognition code for elucidating the mechanism of zinc finger protein-DNA interactions | http://web.iitd.ac.in/~sundar/zifpredict_ihbe | BMC Bioinformatics | Interactome | DNA | 2016 | 28155654 | Durai Sundar | sundar@dbeb.iitd.ac.in | Indian Institute of Technology (IIT D) | New Delhi | New Delhi | IIT | Functional | Prediction | NA |
| 1107 | ZifNN | An ensemble micro neural network approach for elucidating interactions between zinc finger proteins and their target DNA | http://web.iitd.ac.in/~sundar/ZifNN/ | BMC Bioinformatics | Interactome | DNA | 2016 | 28155662 | Durai Sundar | sundar@dbeb.iitd.ac.in | Indian Institute of Technology (IIT D) | New Delhi | New Delhi | IIT | Functional | Prediction | NA |
| 1110 | Staphylococcus haemolyticus MLST Databases | Data of this study thus suggest that MLST can be used to study population structure and diversity among S. haemolyticus isolates | http://pubmlst.org/shaemolyticus/ | PLOS One | Protein Structure | Other | 2016 | 27824930 | Durg Vijai Singh | durg_singh@yahoo.co.in | DBT - Institute of Life Sciences (ILS) | Bhubaneswar | Odisha | DBT | Functional | Database | NA |
| 1131 | SATPdb | Database of structurally annotated therapeutic peptides | http://webs.iiitd.edu.in/raghava/satpdb/ | Nucleic Acids Research | Protein Function | Protein | 2016 | 26527728 | Gajendra PS Raghava | raghava@iiitd.ac.in | CSIR - Institute of Microbial Technology (CSIR-IMTECH) | Chandigarh | Chandigarh | CSIR | Functional | Database | BTISNet |
| 1132 | dbEM | A database of epigenetic modifiers curated from cancerous and normal genomes | http://webs.iiitd.edu.in/raghava/dbem/# | Scientific Reports | Genomics | DNA | 2016 | 26777304 | Gajendra PS Raghava | raghava@iiitd.ac.in | CSIR - Institute of Microbial Technology (CSIR-IMTECH) | Chandigarh | Chandigarh | CSIR | Functional | Database | NA |
| 1133 | STARPDB | BLAST-based structural annotation of protein residues using Protein Data Bank | http://webs.iiitd.edu.in/raghava/starpdb/ | Biology Direct | Protein Function | Protein | 2016 | 26810894 | Gajendra PS Raghava | raghava@iiitd.ac.in | CSIR - Institute of Microbial Technology (CSIR-IMTECH) | Chandigarh | Chandigarh | CSIR | Functional | Database | bio.tools |
| 1134 | CancerIN | Prediction of anticancer molecules using hybrid model developed on molecules screened against NCI-60 cancer cell lines | http://crdd.osdd.net/oscadd/cancerin/ | BMC Cancer | Cheminformatics | Other | 2016 | 26860193 | Gajendra PS Raghava | raghava@iiitd.ac.in | CSIR - Institute of Microbial Technology (CSIR-IMTECH) | Chandigarh | Chandigarh | CSIR | Functional | Prediction | BTISNet |
| 1135 | imRNA | Prediction of Immunomodulatory potential of an RNA sequence for designing non-toxic siRNAs and RNA-based vaccine adjuvants | http://webs.iiitd.edu.in/raghava/imrna/ | Scientific Reports | Vaccinomics | RNA | 2016 | 26861761 | Gajendra PS Raghava | raghava@iiitd.ac.in | CSIR - Institute of Microbial Technology (CSIR-IMTECH) | Chandigarh | Chandigarh | CSIR | Functional | Prediction | BTISNet |
| 1136 | ApoCanD | Database of human apoptotic proteins in the context of cancer | http://webs.iiitd.edu.in/raghava/apocand/ | Scientific Reports | Cheminformatics | Protein | 2016 | 26861916 | Gajendra PS Raghava | raghava@iiitd.ac.in | CSIR - Institute of Microbial Technology (CSIR-IMTECH) | Chandigarh | Chandigarh | CSIR | Functional | Database | NA |
| 1137 | HemoPI | Prediction and virtual screening of hemolytic peptides | http://webs.iiitd.edu.in/raghava/hemopi/ | Scientific Reports | BioDrug | Protein | 2016 | 26953092 | Gajendra PS Raghava | raghava@iiitd.ac.in | CSIR - Institute of Microbial Technology (CSIR-IMTECH) | Chandigarh | Chandigarh | CSIR | Functional | Prediction | bio.tools, BTISNet |
| 1138 | LPIcom | A web server for analysis, comparison and prediction of protein ligand binding sites | http://webs.iiitd.edu.in/raghava/lpicom/ | Biology Direct | Protein Function | Protein | 2016 | 27016210 | Gajendra PS Raghava | raghava@iiitd.ac.in | CSIR - Institute of Microbial Technology (CSIR-IMTECH) | Chandigarh | Chandigarh | CSIR | Functional | Prediction | NA |
| 1139 | CancerDP | Prioritization of anticancer drugs against a cancer using genomic features of cancer cells | http://webs.iiitd.edu.in/raghava/cancerdp/ | Scientific Reports | Cheminformatics Vaccinomics | DNA | 2016 | 27030518 | Gajendra PS Raghava | raghava@iiitd.ac.in | CSIR - Institute of Microbial Technology (CSIR-IMTECH) | Chandigarh | Chandigarh | CSIR | Functional | Prediction | NA |
| 1140 | MtbVeb | Web-Based Platform for Designing Vaccines against Existing and Emerging Strains of Mycobacterium tuberculosis | http://webs.iiitd.edu.in/raghava/mtbveb/ | Methods in Molecular Biology | Vaccinomics | Protein | 2016 | 27096425 | Gajendra PS Raghava | raghava@iiitd.ac.in | CSIR - Institute of Microbial Technology (CSIR-IMTECH) | Chandigarh | Chandigarh | CSIR | Functional | Database | BTISNet |
| 1141 | EbolaVCR | A web-based resource for designing therapeutics against Ebola Virus | http://crdd.osdd.net/oscadd/ebola/ | Scientific Reports | Vaccinomics | Other | 2016 | 27113850 | Gajendra PS Raghava | raghava@iiitd.ac.in | CSIR - Institute of Microbial Technology (CSIR-IMTECH) | Chandigarh | Chandigarh | CSIR | Functional | Database | NA |
| 1142 | ProCarDB | A database of bacterial carotenoids | http://bioinfo.imtech.res.in/servers/procardb/ | BMC Microbiology | Cheminformatics | Other | 2016 | 27230105 | Gajendra PS Raghava | raghava@iiitd.ac.in | CSIR - Institute of Microbial Technology (CSIR-IMTECH) | Chandigarh | Chandigarh | CSIR | Functional | Database | NA |
| 1143 | ZikaVR | An integrated Zika virus resource for genomics,proteomics,phylogenetic and therapeutic analysis | http://bioinfo.imtech.res.in/manojk/zikavr/ | Scientific Reports | Vaccinomics | Other | 2016 | 27633273 | Gajendra PS Raghava | raghava@iiitd.ac.in | CSIR - Institute of Microbial Technology (CSIR-IMTECH) | Chandigarh | Chandigarh | CSIR | Functional | Database | NA |
| 1144 | PEPlife | Manually curated resource of experimentally determined half-life of peptides. PEPlife contains 2229 entries covering 1193 unique peptides | http://webs.iiitd.edu.in/raghava/peplife/ | Scientific Reports | BioDrug | Protein | 2016 | 27819351 | Gajendra PS Raghava | raghava@iiitd.ac.in | CSIR - Institute of Microbial Technology (CSIR-IMTECH) | Chandigarh | Chandigarh | CSIR | Functional | Database | BTISNet |
| 1145 | Cancertope | Wide range of tools are incorporated in this platform that includes screening of epitopes against human reference proteome | http://webs.iiitd.edu.in/raghava/cancertope/ | PLOS One | Genomics BioDrug | Protein | 2016 | 27832200 | Gajendra PS Raghava | raghava@iiitd.ac.in | CSIR - Institute of Microbial Technology (CSIR-IMTECH) | Chandigarh | Chandigarh | CSIR | Functional | Database | NA |
| 1272 | CPPsite 2.0 | Repository of experimentally validated cell-penetrating peptides | http://webs.iiitd.edu.in/raghava/cppsite/ | Nucleic Acids Research | BioDrug | Protein | 2016 | 26586798 | Gajendra PS Raghava Ankur Gautam | raghava@iiitd.ac.in ankurgautam@imtech.res.in | CSIR - Institute of Microbial Technology (CSIR-IMTECH) | Chandigarh | Chandigarh | CSIR | Functional | Database | NA |
| 1292 | FMIMS | Identifying relevant group of miRNAs in cancer using fuzzy mutual information | http://www.jayanta.droppages.com/FMIMS.html | Medical & biological engineering& computation | Genomics | RNA | 2016 | 26264058 | Jayanta Kumar Pal | jkp_it08@yahoo.com | Indian Statistical Institute (ISI) | Kolkata | West Bengal | ISI | Functional | Prediction | NA |
| 1317 | PUFAS | An Approach to Function Annotation for Proteins of Unknown Function (PUFs) in the Transcriptome of Indian Mulberry | http://caps.ncbs.res.in/pufas/ | PLOS One | Protein Function | Protein | 2016 | 26982336 | Karaba N Nataraja | nataraja_karaba@yahoo.com | University of Agricultural Sciences | Bangalore | Karnataka | Other | Functional | Prediction | NA |
| 1326 | NPLB | Learn de novo promoter architectures from genome-wide transcription start sites | https://github.com/NarlikarLab/NPLB | Bioinformatics | Genomics | DNA | 2016 | 26530723 | Leelavati Narlikar | l.narlikar@ncl.res.in | CSIR - National Chemical Laboratory (CSIR-NCL) | Pune | Maharashtra | CSIR | Functional | Prediction | NA |
| 1346 | SigMol | Repertoire of quorum sensing signaling molecules in prokaryotes | http://bioinfo.imtech.res.in/manojk/sigmol | Nucleic Acids Research | Cheminformatics | Other | 2016 | 26490957 | Manoj Kumar | manojk@imtech.res.in | CSIR - Institute of Microbial Technology (CSIR-IMTECH) | Chandigarh | Chandigarh | CSIR | Functional | Database | NA |
| 1347 | siRNAmod | Database of experimentally validated chemically modified siRNAs | http://crdd.osdd.net/servers/sirnamod | Scientific Reports | Genomics | RNA | 2016 | 26818131 | Manoj Kumar | manojk@imtech.res.in | CSIR - Institute of Microbial Technology (CSIR-IMTECH) | Chandigarh | Chandigarh | CSIR | Functional | Database | NA |
| 1348 | ge-CRISPR | An integrated pipeline for the prediction and analysis of sgRNAs genome editing efficiency for CRISPR/Cas system | http://bioinfo.imtech.res.in/manojk/gecrispr/ | Scientific Reports | Genomics | RNA | 2016 | 27581337 | Manoj Kumar | manojk@imtech.res.in | CSIR - Institute of Microbial Technology (CSIR-IMTECH) | Chandigarh | Chandigarh | CSIR | Functional | Prediction | NA |
| 1349 | SMEpred | Webserver will be useful to scientific community engaged in use of RNAi-based technology as well as for therapeutic development | http://bioinfo.imtech.res.in/manojk/smepred | RNA biology (Taylor and Francic Group) | Genomics | RNA | 2016 | 27603513 | Manoj Kumar | manojk@imtech.res.in | CSIR - Institute of Microbial Technology (CSIR-IMTECH) | Chandigarh | Chandigarh | CSIR | Functional | Database | NA |
| 1361 | MSLVP | Prediction of Multiple Subcellular Localization of Viral Proteins Using a Support Vector Machine | http://bioinfo.imtech.res.in/manojk/mslvpred/ | Molecular BioSystems | Protein Function | Protein | 2016 | 27272007 | Manoj Kumar | manojk@imtech.res.in | CSIR - Institute of Microbial Technology (CSIR-IMTECH) | Chandigarh | Chandigarh | CSIR | Functional | Prediction | NA |
| 1366 | CPAD | A Repository of Manually Curated Experimental Data on Protein and Peptide Aggregation | http://www.iitm.ac.in/bioinfo/CPAD/ | PLOS One | BioDrug | Protein | 2016 | 27043825 | Michael Gromiha | gromiha@iitm.ac.in | Indian Institute of Technology (IIT M) | Chennai | Tamil Nadu | IIT | Functional | Prediction | NA |
| 1367 | ProTherm | Applications of Protein Thermodynamic Database for Understanding Protein Mutant Stability and Designing Stable Mutants | http://www.abren.net/protherm/ | Methods in Molecular Biology | Protein Structure | Protein | 2016 | 27115628 | Michael Gromiha | gromiha@iitm.ac.in | Indian Institute of Technology (IIT M) | Chennai | Tamil Nadu | IIT | Functional | Database | Bioinformatics Software and Tools |
| 1368 | PDBparam | Online Resource for Computing Structural Parameters of Proteins | http://www.iitm.ac.in/bioinfo/pdbparam/ | Bioinformatics and biology insights | Protein Structure | Protein | 2016 | 27330281 | Michael Gromiha | gromiha@iitm.ac.in | Indian Institute of Technology (IIT M) | Chennai | Tamil Nadu | IIT | Functional | Database | NA |
| 1387 | HLaffy | Estimating peptide affinities for Class-1 HLA molecules by learning position-specific pair potentials | http://proline.biochem.iisc.ernet.in/HLaffy | Bioinformatics | Protein Function | Protein | 2016 | 27153594 | Nagasuma Chandra | nchandra@biochem.iisc.ernet.in | Indian Institute of Science (IISc) | Bangalore | Karnataka | IISc | Functional | Prediction | NA |
| 1394 | CicerTransDB | Resource for expression and functional study of chickpea transcription factors | http://www.cicertransdb.esy.es | BMC plant biology | Genomics | Other | 2016 | 27472917 | Niranjan Chakraborty | nchakraborty@nipgr.ac.in | DBT - National Institute of Plant Genome Research (NIPGR) | New Delhi | New Delhi | DBT | Functional | Database | NA |
| 1395 | Onco-Regulon | An integrated database of regulatory motifs of cancer genes clubbed with Unique Sequence-Predictor (USP) a software suite that identifies unique sequences for each of these regulatory DNA motifs at the specified position in the genome | http://www.scfbio-iitd.res.in/software/onco/NavSite/index.htm | Database: The Journal of Biological Databases and Curation | Genomics | DNA | 2016 | 27515825 | Nirotpal Mrinal B Jayaram | nmrinal@gmail.com bjayaram@chemistry.iitd.ac.in | Indian Institute of Technology (IIT D) | New Delhi | New Delhi | IIT | Functional | Database | NA |
| 1397 | NAPS | Network Analysis of Protein Structures | http://bioinf.iiit.ac.in/NAPS/ | Nucleic Acids Research | Protein Structure Interactome | Protein | 2016 | 27151201 | Nita Parekh | nita@iiit.ac.in | International Institute of Information Technology (IIITH) | Hyderabad | Telangana | IIIT | Functional | Prediction | NA |
| 1409 | dEMBF | Comprehensive Database of Enzymes of Microalgal Biofuel Feedstock | http://bbprof.immt.res.in/embf. | PLOS One | Protein Structure | Protein | 2016 | 26727469 | Prasanna Kumar Pand | pkrpan@gmail.com | CSIR - Institute of Minerals and Materials Technology (CSIR-IMMT) | Bhubaneswar | Odisha | CSIR | Functional | Database | NA |
| 1411 | DenHunt | Comprehensive Database of the Intricate Network of Dengue-Human Interactions | http://proline.biochem.iisc.ernet.in/DenHunt/ | Plos neglected tropical diseases | Interactome | DNA | 2016 | 27618709 | Prashanthi Karyala | karyalaprashanthi@gmail.com | Indian Academy Degree College | Bangalore | Karnataka | Other | Functional | Database | NA |
| 1419 | ECMIS | computational approach for the identification of hotspots at protein:protein interfaces | http://caps.ncbs.res.in/download/ECMIS/ECMIS.zip | BMC Bioinformatics | Protein Function | Protein | 2016 | 25228146 | Ramanathan Sowdhamini | mini@ncbs.res.in | National Center for Biological Sciences (NCBS) | Bangalore | Karnataka | NCBS | Functional | Prediction | NA |