Browse result page of IndioBioDb
The total number entries retrieved from this search are 52
ID | Resource Name | Resource Description | Resource Link | Journal | Class | Source | Year of Publication | PMID | Corresponding Author | Institute | City | State | Functional Status | Funding Agency | Resource category | Other Repository | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1014 | PPDB | A tool for investigation of plants physiology based on gene ontology | http://www.iitr.ernet.in/ajayshiv/ | Interdisciplinary Sciences: Computational Life Sciences | Protein Function | DNA | 2015 | 25183354 | Ajay Shiv Sharma | 2ajayshiv@gmail.com | Indian Institute of Technology (IIT R) | Roorkee | Uttarakhand | IIT | Functional | Database | NA |
1022 | PHYSICO2 | An UNIX based standalone procedure for computation of physicochemical, window-dependent and substitution based evolutionary properties of protein sequences along with automated block preparation tool, version 2 | http://sourceforge.net/projects/physico2/ | Bioinformation | Protein Function | Protein | 2015 | 26339154 | Amal Kumar Bandyopadhyay | akbanerjee@biotech.buruniv.ac.in | The University of Burdwan | Burdwan | West Bengal | Other | Functional | Prediction | bio.tools |
1023 | ADSBET2 | Automated Determination of Salt-Bridge Energy-Terms version 2 | http://sourceforge.net/projects/ADSBET2/ | Bioinformation | Interactome | Other | 2015 | 26420923 | Amal Kumar Bandyopadhyay | akbanerjee@biotech.buruniv.ac.in | The University of Burdwan | Burdwan | West Bengal | Other | Functional | Database | NA |
1024 | SBION2 | A method for analysing salt bridges from multiple files | https://sourceforge.net/projects/sbion2/ | Bioinformation | Protein Structure | Protein | 2015 | 25780279 | Amal Kumar Bandyopadhyay | akbanerjee@biotech.buruniv.ac.in | The University of Burdwan | Burdwan | West Bengal | Other | Functional | Prediction | NA |
1026 | HPVdetector | NGS-based approach to determine the presence of HPV and their sites of integration in human cancer genome | http://www.actrec.gov.in/pi-webpages/AmitDutt/HPVdetector/HPVDetector.html | British journal of cancer | Vaccinomics Interactome Genomics | DNA | 2015 | 25973533 | Amit Dutt | adutt@actrec.gov.in | Advanced Centre for Treatment Research and Education in Cancer (ACTREC) Tata Memorial Centre | Mumbai | Maharashtra | ACTREC | Functional | Prediction | NA |
1037 | RxnSim | A tool to compare biochemical reactions | http://cran.r-project.org/web/packages/RxnSim/ | Bioinformatics | Cheminformatics | Other | 2015 | 26187943 | Anirban Bhaduri | anirban.b@samsung.com | Samsung Advanced Institute of Technology | Bangalore | Karnataka | Other | Functional | Prediction | bio.tools |
1048 | RM2TS | Web server to convert a tertiary structure to an alphanumeric string and to predict the tertiary structure from the sequence of a protein | http://www.scfbio-iitd.res.in/software/proteomics/rm2ts.jsp | The journal of physical chemsitry | Protein Structure | Protein | 2015 | 26098815 | B Jayaram | bjayaram@chemistry.iitd.ac.in | Indian Institute of Technology (IIT D) | New Delhi | New Delhi | IIT | Functional | Prediction | BTISNet |
1071 | novPTMenzy | A database for enzymes involved in novel post-translational modifications | http://www.nii.ac.in/novptmenzy.html | Database: The Journal of Biological Databases and Curation | Protein Structure Cheminformatics | RNA | 2015 | 25931459 | Debasisa Mohanty | deb@nii.res.in | DBT - National Institute of Immunology (NII) | New Delhi | New Delhi | DBT | Functional | Database | NA |
1080 | RNABP COGEST | A resource for investigating functional RNAs | http://bioinf.iiit.ac.in/RNABPCOGEST/ | Database: The Journal of Biological Databases and Curation | Protein Function | RNA | 2015 | 25776022 | Dhananjay Bhattacharyya | dhananjay.bhattacharyya@saha.ac.in | Saha Institute of Nuclear Physics | Kolkata | West Bengal | Other | Functional | Database | NA |
1085 | m3db | Consists of results from the analysis presented here, integrated with cytoscape web and user-friendly tools for visualization, retrieval and further analysis | http://bioinfo.icgeb.res.in/m3db/. | PLOS One | Interactome | Other | 2015 | 26558755 | Dinesh Gupta | dinesh@icgeb.res.in | DBT - International Centre for Genetic Engineering and Biotechnology (ICGEB) | New Delhi | New Delhi | DBT | Functional | Database | BTISNet |
1086 | miRMOD | A tool for identification and analysis of 5 and 3 miRNA modifications in Next Generation Sequencing small RNA data | http://bioinfo.icgeb.res.in/miRMOD/ | Peer J | Genomics | RNA | 2015 | 26623179 | Dinesh Gupta | dinesh@icgeb.res.in | DBT - International Centre for Genetic Engineering and Biotechnology (ICGEB) | New Delhi | New Delhi | DBT | Functional | Prediction | bio.tools |
1100 | SBMDb | First whole genome putative microsatellite DNA marker database of sugarbeet for bioenergy and industrial applications | http://webapp.cabgrid.res.in/sbmdb/. | Database: The Journal of Biological Databases and Curation | Genomics | DNA | 2015 | 26647370 | Dinesh Kumar | dineshkumarbhu@gmail.com | ICAR - Indian Agricultural Statistics Research Institute (IASRI) | New Delhi | New Delhi | ICAR | Functional | Database | NA |
1146 | HSLpred | Prediction of subcellular localization of human proteins with high accuracy | http://webs.iiitd.edu.in/raghava/hslpred/ | The Journal of Biological Chemistry | Protein Function | Protein | 2015 | 15647269 | Gajendra PS Raghava | raghava@iiitd.ac.in | CSIR - Institute of Microbial Technology (CSIR-IMTECH) | Chandigarh | Chandigarh | CSIR | Functional | Prediction | bio.tools, BTISNet |
1147 | CancerPPD | Database of anticancer peptides and proteins | http://webs.iiitd.edu.in/raghava/cancerppd/ | Nucleic Acids Research | BioDrug | Protein | 2015 | 25270878 | Gajendra PS Raghava | raghava@iiitd.ac.in | CSIR - Institute of Microbial Technology (CSIR-IMTECH) | Chandigarh | Chandigarh | CSIR | Functional | Database | bio.tools, BTISNet |
1148 | AHTPDB | Comprehensive platform for analysis and presentation of antihypertensive peptides | http://webs.iiitd.edu.in/raghava/ahtpdb/ | Nucleic Acids Research | BioDrug | Protein | 2015 | 25392419 | Gajendra PS Raghava | raghava@iiitd.ac.in | CSIR - Institute of Microbial Technology (CSIR-IMTECH) | Chandigarh | Chandigarh | CSIR | Functional | Database | bio.tools, BTISNet |
1149 | RNApin | Identification of protein-interacting nucleotides in a RNA sequence using composition profile of tri-nucleotides | http://webs.iiitd.edu.in/oscadd/egfrpred/ | Genomics | Interactome | RNA | 2015 | 25640448 | Gajendra PS Raghava | raghava@iiitd.ac.in | CSIR - Institute of Microbial Technology (CSIR-IMTECH) | Chandigarh | Chandigarh | CSIR | Functional | Prediction | BTISNet |
1150 | BetaTPred3 | Statistical-based method for predicting Beta Turns in a protein | http://webs.iiitd.edu.in/raghava/betatpred/ | Proteins | Protein Structure | Protein | 2015 | 25728793 | Gajendra PS Raghava | raghava@iiitd.ac.in | CSIR - Institute of Microbial Technology (CSIR-IMTECH) | Chandigarh | Chandigarh | CSIR | Functional | Prediction | NA |
1151 | EGFRpred | QSAR based model for discriminating EGFR inhibitors and non-inhibitors using Random forest | http://webs.iiitd.edu.in/oscadd/egfrpred/ | Biology Direct | Cheminformatics | Other | 2015 | 25880749 | Gajendra PS Raghava | raghava@iiitd.ac.in | CSIR - Institute of Microbial Technology (CSIR-IMTECH) | Chandigarh | Chandigarh | CSIR | Functional | Prediction | BTISNet |
1152 | XIAPin | Designing of efficient inhibitors against apoptosis protein XIAP (inhibitor against drug resistance cancer) | http://webs.iiitd.edu.in/oscadd/xiapin/ | Current cancer drug targets | Cheminformatics | Protein | 2015 | 26143944 | Gajendra PS Raghava | raghava@iiitd.ac.in | CSIR - Institute of Microbial Technology (CSIR-IMTECH) | Chandigarh | Chandigarh | CSIR | Functional | Prediction | NA |
1153 | VaccineDA | Prediction, design and genome-wide screening of oligodeoxynucleotide-based vaccine adjuvants | http://webs.iiitd.edu.in/raghava/vaccineda/ | Scientific Reports | Vaccinomics | Other | 2015 | 26212482 | Gajendra PS Raghava | raghava@iiitd.ac.in | CSIR - Institute of Microbial Technology (CSIR-IMTECH) | Chandigarh | Chandigarh | CSIR | Functional | Prediction | BTISNet |
1154 | AHTpin | Designing and virtual screening of antihypertensive peptides | http://webs.iiitd.edu.in/raghava/ahtpin/ | Scientific Reports | BioDrug | Protein | 2015 | 26213115 | Gajendra PS Raghava | raghava@iiitd.ac.in | CSIR - Institute of Microbial Technology (CSIR-IMTECH) | Chandigarh | Chandigarh | CSIR | Functional | Prediction | BTISNet |
1155 | PEPstrMOD | Structure prediction of peptides containing natural, non-natural and modified residues | http://webs.iiitd.edu.in/raghava/pepstrmod/ | Biology Direct | Protein Structure | Protein | 2015 | 26690490 | Gajendra PS Raghava | raghava@iiitd.ac.in | CSIR - Institute of Microbial Technology (CSIR-IMTECH) | Chandigarh | Chandigarh | CSIR | Functional | Prediction | NA |
1282 | NNvPDB | Neural Network based Protein Secondary Structure Prediction with PDB Validation | http://bit.srmuniv.ac.in/cgi-bin/bit/cfpdb/nnsecstruct.pl | Bioinformation | Protein Structure | Protein | 2015 | 26420924 | Habeeb SKM | habeeb_skm@yahoo.co.in | SRM Institute of Science and Technology | Kattankulathur | Tamil Nadu | Other | Functional | Prediction | NA |
1283 | Hu-Vir | Molecular principles of human virus protein-protein interactions | http://cdfd.org.in/labpages/computational_biology_datasets.html | Bioinformatics | Interactome | Protein | 2015 | 25417202 | Hampapathalu A Nagarajaram | han@cdfd.org.in | CSIR - Centre for DNA Fingerprinting and Diagnostics (CSIR-CDFD) | Hyderabad | Telangana | CSIR | Functional | Prediction | NA |
1287 | matK-QR classifier | A patterns based approach for plant species identification | http://www.neeri.res.in/matk_classifier/index.htm | Biodata Mining | Genomics | Other | 2015 | 27990177 | Hemant J Purohit | hj_purohit@neeri.res.in | CSIR - National Environmental Engineering Research Institute (CSIR-NEERI) | Nagpur | Maharashtra | CSIR | Functional | Prediction | NA |
1294 | DBDiaSNP | An Open-Source Knowledgebase of Genetic Polymorphisms and Resistance Genes Related to Diarrheal Pathogens | http://www.juit.ac.in/attachments/dbdiasnp/ | Omics | Cheminformatics Genomics | DNA | 2015 | 25978092 | Jayashree Ramana | jayashree.ramana@juit.ac.in | Jaypee University of Information Technology (JUIT) | Solan | Himachal Pradesh | JUIT | Functional | Database | NA |
1320 | GREAM | A Web Server to Short-List Potentially Important Genomic Repeat Elements Based on Over-/Under-Representation in Specific Chromosomal Locations, Such as the Gene Neighborhoods, within or across 17 Mammalian Species | http://resource.ibab.ac.in/GREAM/ | PLOS One | Genomics | DNA | 2015 | 26208093 | Kshitish K Acharya | kshitish@ibab.ac.in | Institute of Bioinformatics and Applied Biotechnology (IBAB) | Bangalore | Karnataka | IBAB | Functional | Prediction | bio.tools |
1350 | QSPpred | Prediction and analysis of quorum sensing peptides based on sequence features | http://crdd.osdd.net/servers/qsppred | PLOS One | BioDrug | Protein | 2015 | 25781990 | Manoj Kumar | manojk@imtech.res.in | CSIR - Institute of Microbial Technology (CSIR-IMTECH) | Chandigarh | Chandigarh | CSIR | Functional | Prediction | NA |
1351 | AVP-IC50 Pred | Multiple machine learning techniques-based prediction of peptide antiviral activity in terms of half maximal inhibitory concentration | http://crdd.osdd.net/servers/ic50avp | Biopolymers | BioDrug | Protein | 2015 | 26213387 | Manoj Kumar | manojk@imtech.res.in | CSIR - Institute of Microbial Technology (CSIR-IMTECH) | Chandigarh | Chandigarh | CSIR | Functional | Prediction | NA |
1359 | HPVbase | A knowledgebase of viral integrations, methylation patterns and microRNAs aberrant expression: As potential biomarkers for Human papillomaviruses mediated carcinomas | http://crdd.osdd.net/servers/hpvbase/ | Scientific Reports | Genomics | RNA | 2015 | 26205472 | Manoj Kumar | manojk@imtech.res.in | CSIR - Institute of Microbial Technology (CSIR-IMTECH) | Chandigarh | Chandigarh | CSIR | Functional | Prediction | NA |
1369 | Folding RaCe | Method for predicting changes in protein folding rates upon point mutations | http://www.iitm.ac.in/bioinfo/proteinfolding/foldingrace.html | Bioinformatics | Protein Structure | Protein | 2015 | 25686635 | Michael Gromiha | gromiha@iitm.ac.in | Indian Institute of Technology (IIT M) | Chennai | Tamil Nadu | IIT | Functional | Prediction | NA |
1370 | DIM-Pred | Prediction of protein disorder on amino acid substitutions | http://www.iitm.ac.in/bioinfo/DIM_Pred/ | Analytical biochemistry | Protein Structure | Protein | 2015 | 26348538 | Michael Gromiha | gromiha@iitm.ac.in | Indian Institute of Technology (IIT M) | Chennai | Tamil Nadu | IIT | Functional | Prediction | NA |
1380 | CTDB | An Integrated Chickpea Transcriptome Database for Functional and Applied Genomics | http://nipgr.res.in/ctdb.html | PLOS One | Genomics | DNA | 2015 | 26322998 | Mukesh Jain | mjain@nipgr.ac.in | DBT - National Institute of Plant Genome Research (NIPGR) | New Delhi | New Delhi | DBT | Functional | Database | NA |
1385 | NrichD | Sequence databases enriched with computationally designed protein-like sequences aid in remote homology detection | http://proline.biochem.iisc.ernet.in/NRICHD/ | Nucleic Acids Research | Protein Structure | Protein | 2015 | 25262355 | N Srinivasan | ns@mbu.iisc.ernet.in | Indian Institute of Science (IISc) | Bangalore | Karnataka | IISc | Functional | Database | NA |
1408 | MaxMod | A hidden Markov model based novel interface to MODELLER for improved prediction of protein 3D models | http://www.immt.res.in/maxmod/ | Journal of Molecular Modeling | Protein Structure | Protein | 2015 | 25636267 | Prasanna K Panda | pkpan@yahoo.com | CSIR - Institute of Minerals and Materials Technology (CSIR-IMMT) | Bhubaneswar | Odisha | CSIR | Functional | Prediction | NA |
1415 | CicaArVarDB | NP and InDel database for advancing genetics research and breeding applications in chickpea | http://cicarvardb.icrisat.org | Database: The Journal of Biological Databases and Curation | Genomics | Other | 2015 | 26289427 | Rajeev K Varshney | r.k.varshney@cgiar.org | International Crops Research Institute for the Semi-Arid Tropics (ICRISAT) | Hyderabad | Telangana | Other | Functional | Database | NA |
1422 | DOCKSCORE | A webserver for ranking protein-protein docked poses | http://caps.ncbs.res.in/dockscore/ | BMC Bioinformatics | Protein Structure Protein Function | Protein | 2015 | 25902779 | Ramanathan Sowdhamini | mini@ncbs.res | National Center for Biological Sciences (NCBS) | Bangalore | Karnataka | NCBS | Functional | Prediction | NA |
1441 | PPCheck | A webserver for identification of non-covalent interactions at the interface of a protein-protein complex | http://caps.ncbs.res.in/ppcheck/ | Bioinformatics and biology insights | Protein Function | Protein | 2015 | 26448684 | Ramanathan Sowdhamini | mini@ncbs.res.in | National Center for Biological Sciences (NCBS) | Bangalore | Karnataka | NCBS | Functional | Prediction | bio.tools |
1448 | Layers | A molecular surface peeling algorithm and its applications to analyze protein structures | http://www.csb.iitkgp.ac.in/applications/mol_layers/main | Scientific Reports | Protein Structure Protein Function | Protein | 2015 | 26553411 | Ranjit Prasad Bahadur | r.bahadur@hijli.iitkgp.ernet.in | Indian Institute of Technology (IIT KGP) | Kharagpur | West Bengal | IIT | Functional | Prediction | NA |
1453 | OpsiD | Tool for designing optimized siRNA | http://opsid.in/opsid/ | Gene | Genomics | RNA | 2015 | 25725126 | Reena Murali | reena.rajesh@rit.ac.in | DBT - Rajiv Gandhi Centre for Biotechnology (RGCB) | Thiruvananthapuram | Kerala | DBT | Functional | Prediction | NA |
1472 | BioDB extractor | Customized data extraction system for commonly used bioinformatics databases | http://bioinfo.net.in/BioDB/Home.html | Biodata Mining | Protein Function | Other | 2015 | 26516349 | Sangeeta Sawant | sangeeta@bioinfo.net.in | Savitribai Phule Pune University | Pune | Maharashtra | Other | Functional | Database | NA |
1473 | MBSTAR | Multiple instance learning for predicting specific functional binding sites in microRNA targets | http://www.isical.ac.in/~bioinfo_miu/MBStar30.htm | Scientific Reports | Protein Function | RNA | 2015 | 25614300 | Sanghamitra Bandyopadhyay | sanghami@isical.ac.in | Indian Statistical Institute (ISI) | Kolkata | West Bengal | ISI | Functional | Prediction | bio.tools |
1478 | EnPPIpred | Prediction of Intra-Species Protein-Protein Interactions in Enteropathogens Facilitating Systems Biology Study | http://bicresources.jcbose.ac.in/ssaha4/EnPPIpred/ | PLOS One | Interactome | Protein | 2015 | 26717407 | Santasabuj Das Sudipto Saha | dasss@icmr.org.in ssaha4@jcbose.ac.in | ICMR - National Institute of Cholera and Enteric Diseases (NICED) | Kolkata | West Bengal | ICMR | Functional | Prediction | NA |
1483 | U-care | User-friendly Comprehensive Antibiotic resistance Repository of Escherichia coli | http://www.e-bioinformatics.net/ucare/ | Journal of clinical pathology | Cheminformatics | Protein | 2015 | 25935546 | Saurav B Saha | saurav.saha@shiats.edu.in | SHIATS | Allahabad | Uttar Pradesh | Other | Functional | Database | NA |
1490 | MMNDB | Mammalian Mitochondriaal ncRNA databsase | http://www.iitm.ac.in/bioinfo/mmndb/ | Bioinformation | Genomics | RNA | 2015 | 26912953 | Shanmugam Anandakumar | bioinfoanand@gmail.com | Indian Institute of Technology (IITM) | Chennai | Tamil Nadu | IIT | Functional | Database | NA |
1499 | zf-lncRNApedia | A Comprehensive Online Resource for Zebrafish Long Non-Coding RNAs | http://genome.igib.res.in/zflncRNApedia/ | PLOS One | Genomics | RNA | 2015 | 26065909 | Sridhar Sivasubbu Vinod Scaria | s.sivasubbu@igib.res.in vinods@igib.res.in | CSIR - Institute of Genomics and Integrative Biology (CSIR-IGIB) | New Delhi | New Delhi | CSIR | Functional | Prediction | NA |
1509 | AntiAngioPred | A Server for Prediction of Anti-Angiogenic Peptides | http://crdd.osdd.net/raghava/antiangiopred/ | PLOS One | BioDrug | Protein | 2015 | 26335203 | Subramanian Venkatesan | subbu@clri.res.in | CSIR - Central Leather Research Institute (CSIR-CLRI) | Chennai | Tamil Nadu | CSIR | Functional | Prediction | bio.tools |
1512 | LMPID | A manually curated database of linear motifs mediating protein-protein interactions | http://bicresources.jcbose.ac.in/ssaha4/lmpid/ | Database: The Journal of Biological Databases and Curation | Interactome | Protein | 2015 | 25776024 | Sudipto Saha | ssaha4@jcbose.ac.in | Bose Institute | Kolkata | West Bengal | Other | Functional | Database | NA |
1551 | 16S classifier | A tool for fast and accurate taxonomic classification of 16S rRNA hypervariable regions in metagenomic datasets | http://metabiosys.iiserb.ac.in/16Sclassifier | PLOS One | Genomics | RNA | 2015 | 25646627 | Vineet K Sharma | vineetks@iiserb.ac.in | Indian Institute of Science Education and Research (IISERB) | Bhopal | Madhya Pradesh | IISER | Functional | Prediction | NA |
1554 | CARDIO-PRED | An in silico tool for predicting cardiovascular-disorder associated proteins | http://genomeinformatics.dtu.ac.in/CARDIO-PRED/ | Systems and synthetic biology | Protein Structure | Protein | 2015 | 25972989 | Yasha Hasija | yashahasija@gmail.com | Delhi Technological University (DTU) | New Delhi | New Delhi | DTU | Functional | Prediction | NA |