Browse result page of IndioBioDb
The total number entries retrieved from this search are 100
| ID | Resource Name | Resource Description | Resource Link | Journal | Class | Source | Year of Publication | PMID | Corresponding Author | Institute | City | State | Functional Status | Funding Agency | Resource category | Other Repository | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1329 | DOLOP | Database of bacterial lipoproteins | http://www.mrc-lmb.cam.ac.uk/genomes/dolop | Bioinformatics | Protein Structure | Protein | 2002 | 12016064 | M Babu Madan | madanm@mrc-lmb.cam.ac.uk | Anna University | Chennai | Tamil Nadu | Other | Functional | Database | NA |
| 1335 | HprotDB | The Halophile protein database | http://webapp.cabgrid.res.in/protein/ | Database: The Journal of Biological Databases and Curation | Protein Structure | Protein | 2014 | 25468930 | Mahammad Samir Farooqi | samir@iasri.res.in | ICAR - Indian Agricultural Statistics Research Institute (IASRI) | New Delhi | New Delhi | ICAR | Functional | Database | NA |
| 1363 | MutHTP | Contains information on 183 395 disease-associated and 17 827 neutral mutations in human transmembrane proteins | http://www.iitm.ac.in/bioinfo/MutHTP/ | Bioinformatics | Protein Structure | Protein | 2018 | 29401218 | Michael Gromiha | gromiha@iitm.ac.in | Indian Institute of Technology (IIT M) | Chennai | Tamil Nadu | IIT | Functional | Database | NA |
| 1365 | PROXiMATE | Database of thermodynamic data for more than 6000 missense mutations in 174 heterodimeric protein-protein complexes, supplemented with interaction network data from STRING database, solvent accessibility, sequence, structural and functional information, experimental conditions and literature information | http://www.iitm.ac.in/bioinfo/PROXiMATE/ | Bioinformatics | Protein Structure | Protein | 2017 | 28498885 | Michael Gromiha | gromiha@iitm.ac.in | Indian Institute of Technology (IIT M) | Chennai | Tamil Nadu | IIT | Functional | Database | NA |
| 1367 | ProTherm | Applications of Protein Thermodynamic Database for Understanding Protein Mutant Stability and Designing Stable Mutants | http://www.abren.net/protherm/ | Methods in Molecular Biology | Protein Structure | Protein | 2016 | 27115628 | Michael Gromiha | gromiha@iitm.ac.in | Indian Institute of Technology (IIT M) | Chennai | Tamil Nadu | IIT | Functional | Database | Bioinformatics Software and Tools |
| 1368 | PDBparam | Online Resource for Computing Structural Parameters of Proteins | http://www.iitm.ac.in/bioinfo/pdbparam/ | Bioinformatics and biology insights | Protein Structure | Protein | 2016 | 27330281 | Michael Gromiha | gromiha@iitm.ac.in | Indian Institute of Technology (IIT M) | Chennai | Tamil Nadu | IIT | Functional | Database | NA |
| 1369 | Folding RaCe | Method for predicting changes in protein folding rates upon point mutations | http://www.iitm.ac.in/bioinfo/proteinfolding/foldingrace.html | Bioinformatics | Protein Structure | Protein | 2015 | 25686635 | Michael Gromiha | gromiha@iitm.ac.in | Indian Institute of Technology (IIT M) | Chennai | Tamil Nadu | IIT | Functional | Prediction | NA |
| 1370 | DIM-Pred | Prediction of protein disorder on amino acid substitutions | http://www.iitm.ac.in/bioinfo/DIM_Pred/ | Analytical biochemistry | Protein Structure | Protein | 2015 | 26348538 | Michael Gromiha | gromiha@iitm.ac.in | Indian Institute of Technology (IIT M) | Chennai | Tamil Nadu | IIT | Functional | Prediction | NA |
| 1372 | ProCaff | Repository of protein-carbohydrate binding affinity | http://www.iitm.ac.in/bioinfo/procaff/ | Bioinformatics | Protein Structure | Protein | 2020 | 32119071 | Michael Gromiha | gromiha@iitm.ac.in | Indian Institute of Technology (IIT M) | Chennai | Tamil Nadu | IIT | Functional | Database | NA |
| 1379 | LRRsearch | An asynchronous server-based application for the prediction of leucine-rich repeat motifs and an integrative database of NOD-like receptors | http://www.lrrsearch.com/ | Computers in biology and medicine | Protein Structure | Other | 2014 | 25150822 | Mrinal Samanta | msamanta1969@yahoo.com | ICAR - Central Institute of Freshwater Aquaculture (CIFA) | Bhubaneswar | Odisha | ICAR | Functional | Database | NA |
| 1383 | KinG | A database of protein kinases in genomes | http://king.mbu.iisc.ernet.in/ | Nucleic Acids Research | Genomics Protein Structure | Protein | 2004 | 14681382 | N Srinivasan | ns@mbu.iisc.ernet.in | Indian Institute of Science (IISc) | Bangalore | Karnataka | IISc | Functional | Database | NA |
| 1384 | PALI | A database of Phylogeny and ALIgnment of homologous protein structures | http://pauling.mbu.iisc.ernet.in/ | Nucleic Acids Research | Protein Structure | Protein | 2001 | 11125050 | N Srinivasan | ns@mbu.iisc.ernet.in | Indian Institute of Science (IISc) | Bangalore | Karnataka | IISc | Functional | Database | NA |
| 1385 | NrichD | Sequence databases enriched with computationally designed protein-like sequences aid in remote homology detection | http://proline.biochem.iisc.ernet.in/NRICHD/ | Nucleic Acids Research | Protein Structure | Protein | 2015 | 25262355 | N Srinivasan | ns@mbu.iisc.ernet.in | Indian Institute of Science (IISc) | Bangalore | Karnataka | IISc | Functional | Database | NA |
| 1386 | CLAP | A webserver for automatic classification of proteins with special reference to multi:domain proteins | http://nslab.mbu.iisc.ernet.in/clap/ | BMC Bioinformatics | Protein Structure | Protein | 2014 | 25282152 | N Srinivasan | ns@mbu.iisc.ernet.in | Indian Institute of Science (IISc) | Bangalore | Karnataka | IISc | Functional | Prediction | bio.tools |
| 1392 | Lectindb | A plant lectin database | http://nscdb.bic.physics.iisc.ernet.in | Glycobiology | Protein Structure | Protein | 2006 | 16782824 | Nagasuma Chandra | nchandra@serc.iisc.ernet.in | Indian Institute of Science (IISc) | Bangalore | Karnataka | IISc | Functional | Database | NA |
| 1397 | NAPS | Network Analysis of Protein Structures | http://bioinf.iiit.ac.in/NAPS/ | Nucleic Acids Research | Protein Structure Interactome | Protein | 2016 | 27151201 | Nita Parekh | nita@iiit.ac.in | International Institute of Information Technology (IIITH) | Hyderabad | Telangana | IIIT | Functional | Prediction | NA |
| 1399 | NAPS Update | Network Analysis of Protein Structures | http://bioinf.iiit.ac.in/NAPS/ | Nucleic Acids Research | Protein Structure Interactome | Protein | 2019 | 31106363 | Nita Parekh | nita@iiit.ac.in | International Institute of Information Technology (IIITH) | Hyderabad | Telangana | IIIT | Functional | Prediction | NA |
| 1403 | human Y chromosome database | A database for human Y chromosome protein data | http://puratham.googlepages.com/ | Bioinformation | Protein Structure | Protein | 2009 | 20461156 | Pallipalayam Periyasamy Karthikeyan | ppkarthikeyan@gmail.com | Bharathiar University | Coimbatore | Tamil Nadu | Other | Functional | Database | NA |
| 1406 | HYPO | A database of hypothetical human proteins | http://www.bioclues.org/hypo2 | Protein and peptide letters | Protein Structure | Protein | 2018 | 30152276 | Pawan Dhar | pawandhar@gmail.com | Jawaharlal Nehru University (JNU) | New Delhi | New Delhi | JNU | Functional | Database | NA |
| 1408 | MaxMod | A hidden Markov model based novel interface to MODELLER for improved prediction of protein 3D models | http://www.immt.res.in/maxmod/ | Journal of Molecular Modeling | Protein Structure | Protein | 2015 | 25636267 | Prasanna K Panda | pkpan@yahoo.com | CSIR - Institute of Minerals and Materials Technology (CSIR-IMMT) | Bhubaneswar | Odisha | CSIR | Functional | Prediction | NA |
| 1409 | dEMBF | Comprehensive Database of Enzymes of Microalgal Biofuel Feedstock | http://bbprof.immt.res.in/embf. | PLOS One | Protein Structure | Protein | 2016 | 26727469 | Prasanna Kumar Pand | pkrpan@gmail.com | CSIR - Institute of Minerals and Materials Technology (CSIR-IMMT) | Bhubaneswar | Odisha | CSIR | Functional | Database | NA |
| 1417 | OxDBase | A database of oxygenases involved in biodegradation | http://webs.iiitd.edu.in/raghava/oxdbase/ | BMC Research Notes | Protein Structure | Protein | 2009 | 19405962 | Rakesh K Jain | rkj@imtech.res.in | CSIR - Institute of Microbial Technology (CSIR-IMTECH) | Chandigarh | Chandigarh | CSIR | Functional | Database | NA |
| 1422 | DOCKSCORE | A webserver for ranking protein-protein docked poses | http://caps.ncbs.res.in/dockscore/ | BMC Bioinformatics | Protein Structure Protein Function | Protein | 2015 | 25902779 | Ramanathan Sowdhamini | mini@ncbs.res | National Center for Biological Sciences (NCBS) | Bangalore | Karnataka | NCBS | Functional | Prediction | NA |
| 1423 | LenVarDB | Database of length-variant protein domains | http://caps.ncbs.res.in/lenvardb | Nucleic Acids Research | Protein Structure | Protein | 2014 | 24194591 | Ramanathan Sowdhamini | mini@ncbs.res.in | National Center for Biological Sciences (NCBS) | Bangalore | Karnataka | NCBS | Functional | Database | NA |
| 1424 | 3PFDB | Search protocol and update for the identification of representatives of protein sequence domain families | http://caps.ncbs.res.in/3pfdbplus/ | Database: The Journal of Biological Databases and Curation | Protein Structure | Protein | 2014 | 24700812 | Ramanathan Sowdhamini | mini@ncbs.res.in | National Center for Biological Sciences (NCBS) | Bangalore | Karnataka | NCBS | Functional | Database | NA |
| 1428 | PASS2 | An update to the database of structure-based sequence alignments of structural domain superfamilies | http://caps.ncbs.res.in/pass2/ | Nucleic Acids Research | Protein Structure | DNA | 2012 | 22123743 | Ramanathan Sowdhamini | mini@ncbs.res.in | National Center for Biological Sciences (NCBS) | Bangalore | Karnataka | NCBS | Functional | Database | bio.tools, Bioinformatics Software and Tools |
| 1429 | COILCHECK+ | Structural attributes for the recognition of weak and anomalous regions in coiled:coils of myosins and other motor proteins | http://caps.ncbs.res.in/coilcheckplus/ | BMC Research Notes | Protein Structure Protein Function | Protein | 2012 | 23009691 | Ramanathan Sowdhamini | mini@ncbs.res.in | National Center for Biological Sciences (NCBS) | Bangalore | Karnataka | NCBS | Functional | Prediction | NA |
| 1430 | Myosinome | A database of myosins from select eukaryotic genomes to facilitate analysis of sequence-structure-function relationships | http://caps.ncbs.res.in/myosinome | Bioinformatics and biology insights | Protein Structure Protein Function Genomics | DNA | 2012 | 23189029 | Ramanathan Sowdhamini | mini@ncbs.res.in | National Center for Biological Sciences (NCBS) | Bangalore | Karnataka | NCBS | Functional | Database | NA |
| 1431 | 3dswap-pred | Prediction of 3D domain swapping from protein sequence using Random Forest approach. | http://caps.ncbs.res.in/3dswap-pred/ | Protein and peptide letters | Protein Structure | Protein | 2011 | 21592079 | Ramanathan Sowdhamini | mini@ncbs.res.in | National Center for Biological Sciences (NCBS) | Bangalore | Karnataka | NCBS | Functional | Prediction | NA |
| 1432 | HORI | A web server to compute Higher Order Residue Interactions in protein structures | http://caps.ncbs.res.in/hori/ | BMC Bioinformatics | Protein Structure | Protein | 2010 | 20122196 | Ramanathan Sowdhamini | mini@ncbs.res.in | National Center for Biological Sciences (NCBS) | Bangalore | Karnataka | NCBS | Functional | Prediction | NA |
| 1437 | HARMONY | A server for the assessment of protein structures | http://caps.ncbs.res.in/harmony/ | Nucleic Acids Research | Protein Structure | Protein | 2006 | 16844999 | Ramanathan Sowdhamini | mini@ncbs.res.in | National Center for Biological Sciences (NCBS) | Bangalore | Karnataka | NCBS | Functional | Prediction | bio.tools |
| 1438 | DIAL | A webbased server for the automatic identification of structural domains in proteins | http://caps.ncbs.res.in/DIAL/home.html | Nucleic Acids Research | Protein Structure | Protein | 2005 | 15980441 | Ramanathan Sowdhamini | mini@ncbs.res.in | National Center for Biological Sciences (NCBS) | Bangalore | Karnataka | NCBS | Functional | Prediction | NA |
| 1439 | DSDBASE | A consortium of native and modelled disulphide bonds in proteins | http://www.ncbs.res.in/ | Nucleic Acids Research | Protein Structure | Protein | 2004 | 14681394 | Ramanathan Sowdhamini | mini@ncbs.res.in | National Center for Biological Sciences (NCBS) | Bangalore | Karnataka | NCBS | Functional | Database | Bioinformatics Software and Tools |
| 1443 | GenDiS | Database Update With Improved Approach and Features to Recognize Homologous Sequences of Protein Domain Superfamilies | http://caps.ncbs.res.in/cgi-bin/gendis+/index.py | Database: The Journal of Biological Databases and Curation | Protein Structure | Protein | 2019 | 30943284 | Ramanathan Sowdhamini | mini@ncbs.res.in | National Center for Biological Sciences (NCBS) | Bangalore | Karnataka | NCBS | Functional | Database | NA |
| 1445 | MIPModDB | A central resource for the superfamily of major intrinsic proteins | http://bioinfo.iitk.ac.in/MIPModDB | Nucleic Acids Research | Protein Structure | Protein | 2012 | 22080560 | Ramasubbu Sankararamakrishnan | rsankar@iitk.ac.in | Indian Institute of Technology (IIT R) | Roorkee | Uttarakhand | IIT | Functional | Database | NA |
| 1448 | Layers | A molecular surface peeling algorithm and its applications to analyze protein structures | http://www.csb.iitkgp.ac.in/applications/mol_layers/main | Scientific Reports | Protein Structure Protein Function | Protein | 2015 | 26553411 | Ranjit Prasad Bahadur | r.bahadur@hijli.iitkgp.ernet.in | Indian Institute of Technology (IIT KGP) | Kharagpur | West Bengal | IIT | Functional | Prediction | NA |
| 1459 | SVM-PB-Pred | SVM based protein block prediction method using sequence profiles and secondary structures | http://bioinfo.bdu.ac.in/~svmpbpred | Protein and peptide letters | Protein Structure | Protein | 2014 | 23855661 | S Parthasarathy | bdupartha@gmail.com | Bharathidasan University | Tiruchirappalli | Tamil Nadu | Other | Functional | Prediction | NA |
| 1469 | wwPDB | Atomic co-ordinates and structure factors for I249T mutant of human CTSK (codes 5Z5O) have been deposited in the Protein Data Bank | http://wwpdb.org/ | The FEBS journal | Protein Structure Genomics | Protein | 2018 | 30199612 | Sampa Biswas | sampa.sinp@gmail.com | Saha Institute of Nuclear Physics | Kolkata | West Bengal | Other | Functional | Database | NA |
| 1475 | Histome | A relational knowledgebase of human histone proteins and histone modifying enzymes | http://www.actrec.gov.in/histome/. | Nucleic Acids Research | Protein Structure | Protein | 2012 | 22140112 | Sanjay Gupta Sanjeev Galande | sanjeev@iiserpune.ac.in sgupta@actrec.gov.in | Advanced Centre for Treatment Research and Education in Cancer (ACTREC) Tata Memorial Centre | Mumbai | Maharashtra | ACTREC | Functional | Database | bio.tools, BTISNet |
| 1479 | GraProStar | Ranking the quality of protein structure models using sidechain based network properties | http://vishgraph.mbu.iisc.ernet.in/GraProStr/native_non_native_ranking.html | F1000 research | Protein Structure | Protein | 2014 | 25580218 | Saraswathi Vishveshwara | sv@mbu.iisc.ernet.in | Indian Institute of Science (IISc) | Bangalore | Karnataka | IISc | Functional | Prediction | NA |
| 1482 | MCDRP | Manually curated database of rice proteins | http://www.genomeindia.org/biocuration | Nucleic Acids Research | Protein Structure | Protein | 2014 | 24214963 | Saurabh Raghuvanshi | saurabh@genomeindia.org | University of Delhi (DU) South Campus | New Delhi | New Delhi | DU | Functional | Database | NA |
| 1502 | MAAP | Malarial adhesins and adhesin-like proteins predictor | http://maap.igib.res.in | Proteins | Protein Structure | Protein | 2008 | 17879344 | Srinivasan Ramachandran | ramuigib@gmail.com | CSIR - Institute of Genomics and Integrative Biology (CSIR-IGIB) | New Delhi | New Delhi | CSIR | Functional | Prediction | NA |
| 1522 | 3D-NuS | A Web Server for Automated Modeling and Visualization of non-canonical 3-Dimensional Nucleic Acid Structures | http://iith.ac.in/3dnus/ | Journal of molecular biology | Protein Structure | DNA | 2017 | 28652006 | Thenmalarchelvi Rathinavelan | tr@iith.ac.in | Indian Institute of Technology (IIT H) | Hyderabad | Telangana | IIT | Functional | Prediction | NA |
| 1543 | OrFin | A web tool for detection of putative orthologs | http://bifl.uohyd.ac.in/orfin | Bioinformation | Protein Structure | Other | 2012 | 23055622 | Vaibhav Vindal | vvls@uohyd.ernet.in | University of Hyderabad | Hyderabad | Telangana | Other | Functional | Prediction | BTISNet |
| 1548 | BioFuelDB | Comprehensive data of curated biofuel enzymes, their novel homologs identified from diverse metagenomes, and the hybrid prediction tool Benz are presented as a web server which can be used for the prediction of biofuel enzymes from genomic and metagenomic datasets | http://metabiosys.iiserb.ac.in/biofueldb/ | Peer J | Protein Structure | Other | 2017 | 28875065 | Vineet K Sharma | vineetks@iiserb.ac.in | Indian Institute of Science Education and Research (IISERB) | Bhopal | Madhya Pradesh | IISER | Functional | Database | NA |
| 1554 | CARDIO-PRED | An in silico tool for predicting cardiovascular-disorder associated proteins | http://genomeinformatics.dtu.ac.in/CARDIO-PRED/ | Systems and synthetic biology | Protein Structure | Protein | 2015 | 25972989 | Yasha Hasija | yashahasija@gmail.com | Delhi Technological University (DTU) | New Delhi | New Delhi | DTU | Functional | Prediction | NA |
| 1569 | ProSTRIP | A method to find similar structural repeats in three:dimensional protein structures | http://cluster.physics.iisc.ernet.in/prostrip/ | Computational Biology and Chemistry | Protein Structure | Protein | 2010 | 20430700 | K Sekar | sekar@physics.iisc.ernet.in | Indian Institute of Science (IISc) | Bangalore | Karnataka | IISc | Non-Functional | Prediction | bio.tools |
| 1570 | SSEP | Secondary structural elements of proteins | http://cluster.physics.iisc.ernet.in/ssep/ | Nucleic Acids Research | Protein Structure | Protein | 2003 | 12824336 | K Sekar | sekar@physics.iisc.ernet.in | Indian Institute of Science (IISc) | Bangalore | Karnataka | IISc | Non-Functional | Database | bio.tools |
| 1586 | iRDP | Engineering s for Thermostability with iRDP Web Server | http://irdp.ncl.res.in/ | PLOS One | Protein Structure | Protein | 2015 | 26436543 | Sureshkumar Ramasamy CG Suresh | s.ramasamy@ncl.res.in cg.suresh@ncl.res.in | CSIR - National Chemical Laboratory (CSIR-NCL) | Pune | Maharashtra | CSIR | Non-Functional | Prediction | NA |
| 1591 | bPE toolkit | Toolkit for computational protein engineering | http://www.iitg.ac.in/bpetoolkit/ | Systems and synthetic biology | Protein Structure | Protein | 2014 | 26396658 | V Ramakrishnan | vibin@iitg.ernet.in | Indian Institute of Technology (IIT G) | Guwahati | Assam | IIT | Non-Functional | Database | bio.tools |