The total number entries retrieved from this search are 115

ID	Resource Name	Resource Description	Resource Link	Journal	Class	Source	Year of Publication	PMID	Corresponding Author	Email	Institute	City	State	Functional Status	Funding Agency	Resource category	Other Repository
1237	BhairPred	Prediction of beta-hairpins in a protein from multiple alignment information using ANN and SVM techniques	http://crdd.osdd.net/raghava/bhairpred/	Nucleic Acids Research	Protein Function	Protein	2005	15988830	Gajendra PS Raghava	raghava@iiitd.ac.in	CSIR - Institute of Microbial Technology (CSIR-IMTECH)	Chandigarh	Chandigarh	CSIR	Functional	Prediction	bio.tools, BTISNet
1240	MitPred	Prediction of mitochondrial proteins using SVM and hidden Markov model	http://webs.iiitd.edu.in/raghava/mitpred/	The Journal of Biological Chemistry	Protein Function	Protein	2005	16339140	Gajendra PS Raghava	raghava@iiitd.ac.in	CSIR - Institute of Microbial Technology (CSIR-IMTECH)	Chandigarh	Chandigarh	CSIR	Functional	Prediction	bio.tools, BTISNet
1245	NRpred	A SVM based method for the classification of nuclear receptors	http://webs.iiitd.edu.in/raghava/nrpred/	The Journal of Biological Chemistry	Protein Function	DNA	2004	15039428	Gajendra PS Raghava	raghava@iiitd.ac.in	CSIR - Institute of Microbial Technology (CSIR-IMTECH)	Chandigarh	Chandigarh	CSIR	Functional	Prediction	bio.tools, BTISNet
1249	GPCRpred	SVM-based method for prediction of families and subfamilies of G-protein coupled receptors	http://webs.iiitd.edu.in/raghava/gpcrpred/	Nucleic Acids Research	Protein Function	Protein	2004	15215416	Gajendra PS Raghava	raghava@iiitd.ac.in	CSIR - Institute of Microbial Technology (CSIR-IMTECH)	Chandigarh	Chandigarh	CSIR	Functional	Prediction	bio.tools, BTISNet
1250	ESLpred	SVM-based method for subcellular localization of eukaryotic proteins using dipeptide composition and PSI-BLAST	http://webs.iiitd.edu.in/raghava/eslpred/	Nucleic Acids Research	Protein Function	Protein	2004	15215421	Gajendra PS Raghava	raghava@iiitd.ac.in	CSIR - Institute of Microbial Technology (CSIR-IMTECH)	Chandigarh	Chandigarh	CSIR	Functional	Prediction	BTISNet
1262	PSAWeb	Analysis of Protein Sequence and Multiple Alignment.	https://webs.iiitd.edu.in/raghava/psa/	Biotech Software & Internet Report	Protein Function	Protein	2001	NA	Gajendra PS Raghava	raghava@iiitd.ac.in	CSIR - Institute of Microbial Technology (CSIR-IMTECH)	Chandigarh	Chandigarh	CSIR	Functional	Prediction	BTISNet
1277	Terezyme	A predictive algorithm for identification, classification and assignment of broad substrate unit to terpene synthase (TPS) and prenyl transferase (PT) enzymes, known to generate the enormous structural and functional diversity of terpenoid compounds across the plant kingdom	http://nipgr.res.in/terzyme.html	BMC Bioinformatics	Protein Function Cheminformatics	Protein	2018	29339971	Gitanjali Yadav	gy@nipgr.ac.in	DBT - National Institute of Plant Genome Research (NIPGR)	New Delhi	New Delhi	DBT	Functional	Database	NA
1278	KIXBAESE	Provides useful information about critical aspects of KIX domains such as their intrinsic disorder, hydrophobicity profiles, functional classification and annotation based on domain architectures	http://www.nipgr.res.in/kixbase/home.php	Scientific Reports	Protein Function	Other	2017	29097748	Gitanjali Yadav	gy@nipgr.ac.in	DBT - National Institute of Plant Genome Research (NIPGR)	New Delhi	New Delhi	DBT	Functional	Database	NA
1302	CyanoPhyChe	A database for physico-chemical properties, structure and biochemical pathway information of cyanobacterial proteins	http://bif.uohyd.ac.in/cpc	PLOS One	Protein Function	Protein	2012	23185330	Jogadhenu S S Prakash	syamsunderp@yahoo.com	University of Hyderabad	Hyderabad	Telangana	Other	Functional	Database	BTISNet
1304	Ramachandran plot	Ramachandran plot on the web	http://dicsoft1.physics.iisc.ernet.in/rp/	Protein and peptide letters	Protein Function	Other	2007	17897092	K Sekar	sekar@iisc.ac.in	Indian Institute of Science (IISc)	Bangalore	Karnataka	IISc	Functional	Prediction	BTISNet
1308	PPS	A computing engine to find Palindromes in all Protein sequences	http://pranag.physics.iisc.ernet.in/pps/	Bioinformation	Protein Function	Protein	2014	24516327	K Sekar	sekar@physics.iisc.ernet.in	Indian Institute of Science (IISc)	Bangalore	Karnataka	IISc	Functional	Prediction	bio.tools
1317	PUFAS	An Approach to Function Annotation for Proteins of Unknown Function (PUFs) in the Transcriptome of Indian Mulberry	http://caps.ncbs.res.in/pufas/	PLOS One	Protein Function	Protein	2016	26982336	Karaba N Nataraja	nataraja_karaba@yahoo.com	University of Agricultural Sciences	Bangalore	Karnataka	Other	Functional	Prediction	NA
1319	BoMiProt	Database of bovine milk proteins	http://bomiprot.org	Journal of Proteomics	Protein Function	Protein	2020	31958638	Kiran Ambatipudi	kiranfbt@iitr.ac.in	Indian Institute of Technology (IIT R)	Roorkee	Uttarakhand	IIT	Functional	Database	NA
1333	PIZSA	An Empirical Scoring Scheme for Evaluation of Protein-Protein Interactions	http://cospi.iiserpune.ac.in/pizsa/	Nucleic Acids Research	Protein Function	Protein	2019	31114890	M S Madhusudhan	madhusudhan@iiserpune.ac.in	Indian Institute of Science Education and Research (IISERP)	Pune	Maharashtra	IISER	Functional	Prediction	bio.tools
1361	MSLVP	Prediction of Multiple Subcellular Localization of Viral Proteins Using a Support Vector Machine	http://bioinfo.imtech.res.in/manojk/mslvpred/	Molecular BioSystems	Protein Function	Protein	2016	27272007	Manoj Kumar	manojk@imtech.res.in	CSIR - Institute of Microbial Technology (CSIR-IMTECH)	Chandigarh	Chandigarh	CSIR	Functional	Prediction	NA
1374	Pred-MutHTP	A method for predicting disease causing and neutral mutations in human transmembrane proteins	https://www.iitm.ac.in/bioinfo/PredMutHTP/.	Human Mutation	Genomics Protein Function	Protein	2020	31821684	Michael Gromiha	gromiha@iitm.ac.in	Indian Institute of Technology (IIT M)	Chennai	Tamil Nadu	IIT	Functional	Prediction	NA
1376	Seq2Feature	A Comprehensive Web-Based Feature Extraction Tool	https://www.iitm.ac.in/bioinfo/SBFE/index.html	Bioinformatics	Protein Function	Other	2019	31135038	Michael Gromiha	gromiha@iitm.ac.in	Indian Institute of Technology (IIT M)	Chennai	Tamil Nadu	IIT	Functional	Prediction	bio.tools
1377	Protein-RNA	Prediction of RNA Binding Residues: An Extensive Analysis Based on Structure and Function to Select the Best Predictor	https://www.iitm.ac.in/bioinfo/RNA-protein/	PLOS One	Protein Function	Protein	2014	24658593	Michael Gromiha	gromiha@iitm.ac.in	Indian Institute of Technology (IIT M)	Chennai	Tamil Nadu	IIT	Functional	Prediction	NA
1387	HLaffy	Estimating peptide affinities for Class-1 HLA molecules by learning position-specific pair potentials	http://proline.biochem.iisc.ernet.in/HLaffy	Bioinformatics	Protein Function	Protein	2016	27153594	Nagasuma Chandra	nchandra@biochem.iisc.ernet.in	Indian Institute of Science (IISc)	Bangalore	Karnataka	IISc	Functional	Prediction	NA
1389	ABS-Scan	In silico alanine scanning mutagenesis for binding site residues in protein:ligand complex	http://proline.biochem.iisc.ernet.in/abscan/	F1000 research	Protein Function	Protein	2014	25685322	Nagasuma Chandra	nchandra@biochem.iisc.ernet.in	Indian Institute of Science (IISc)	Bangalore	Karnataka	IISc	Functional	Prediction	bio.tools
1390	PocketAlign	A novel algorithm for aligning binding sites in protein structures	http://proline.physics.iisc.ernet.in/pocketalign/	Journal of chemical information and modeling	Protein Function	Protein	2011	21662242	Nagasuma Chandra	nchandra@biochem.iisc.ernet.in	Indian Institute of Science (IISc)	Bangalore	Karnataka	IISc	Functional	Prediction	NA
1391	PocketDepth	A new depth based algorithm for identification of ligand binding sites in proteins	http://proline.physics.iisc.ernet.in/pocketdepth	Journal of structural biology	Protein Function	Protein	2008	17949996	Nagasuma Chandra	nchandra@biochem.iisc.ernet.in	Indian Institute of Science (IISc)	Bangalore	Karnataka	IISc	Functional	Prediction	NA
1401	APSLAP	An adaptive boosting technique for predicting subcellular localization of apoptosis protein	http://apslap.bicpu.edu.in	Acta biotheretica	Protein Function	Protein	2013	23982307	P T V Lakshmi	lakanna@bicpu.edu.in	Pondicherry University	Pondicherry	Pondicherry	Other	Functional	Prediction	BTISNet
1404	HypoxiaDB	A database of hypoxia-regulated proteins	http://www.hypoxiadb.com	Database: The Journal of Biological Databases and Curation	Protein Function	Protein	2013	24178989	Pankaj Khurana	pkhurana08@gmail.com	Defence Institute of Physiology and Allied Sciences (DIPAS) DRDO	New Delhi	New Delhi	DRDO	Functional	Database	bio.tools
1405	HSPIR	A manually annotated heat shock protein information resource	http://pdslab.biochem.iisc.ernet.in/hspir/	Bioinformatics	Protein Function	Protein	2012	22923302	Patrick D Silva	patrick@biochem.iisc.ernet.in	Indian Institute of Science (IISc)	Bangalore	Karnataka	IISc	Functional	Database	NA
1419	ECMIS	computational approach for the identification of hotspots at protein:protein interfaces	http://caps.ncbs.res.in/download/ECMIS/ECMIS.zip	BMC Bioinformatics	Protein Function	Protein	2016	25228146	Ramanathan Sowdhamini	mini@ncbs.res.in	National Center for Biological Sciences (NCBS)	Bangalore	Karnataka	NCBS	Functional	Prediction	NA
1421	RStrucFam	To predict the structure, type of cognate RNA(s) and function(s) of proteins, where possible, from mere sequence information	http://caps.ncbs.res.in/rstrucfam	BMC Bioinformatics	Protein Function	RNA	2016	27717309	Ramanathan Sowdhamini	mini@ncbs.res.in	National Center for Biological Sciences (NCBS)	Bangalore	Karnataka	NCBS	Functional	Database	NA
1422	DOCKSCORE	A webserver for ranking protein-protein docked poses	http://caps.ncbs.res.in/dockscore/	BMC Bioinformatics	Protein Structure Protein Function	Protein	2015	25902779	Ramanathan Sowdhamini	mini@ncbs.res	National Center for Biological Sciences (NCBS)	Bangalore	Karnataka	NCBS	Functional	Prediction	NA
1429	COILCHECK+	Structural attributes for the recognition of weak and anomalous regions in coiled:coils of myosins and other motor proteins	http://caps.ncbs.res.in/coilcheckplus/	BMC Research Notes	Protein Structure Protein Function	Protein	2012	23009691	Ramanathan Sowdhamini	mini@ncbs.res.in	National Center for Biological Sciences (NCBS)	Bangalore	Karnataka	NCBS	Functional	Prediction	NA
1430	Myosinome	A database of myosins from select eukaryotic genomes to facilitate analysis of sequence-structure-function relationships	http://caps.ncbs.res.in/myosinome	Bioinformatics and biology insights	Protein Structure Protein Function Genomics	DNA	2012	23189029	Ramanathan Sowdhamini	mini@ncbs.res.in	National Center for Biological Sciences (NCBS)	Bangalore	Karnataka	NCBS	Functional	Database	NA
1433	3PFDB	A database of best representative PSSM profiles (BRPs) of protein families generated using a novel data mining approach	http://caps.ncbs.res.in/3pfdb	Biodata Mining	Protein Function	Protein	2009	19961575	Ramanathan Sowdhamini	mini@ncbs.res.in	National Center for Biological Sciences (NCBS)	Bangalore	Karnataka	NCBS	Functional	Database	NA
1434	COILCHECK	an interactive server for the analysis of interface regions in coiled coils	http://caps.ncbs.res.in/coilcheck/	Protein and peptide letters	Protein Function	Other	2008	18221010	Ramanathan Sowdhamini	mini@ncbs.res.in	National Center for Biological Sciences (NCBS)	Bangalore	Karnataka	NCBS	Functional	Prediction	NA
1436	IWS	integrated web server for protein sequence and structure analysis	http://caps.ncbs.res.in/iws	Bioinformation	Protein Function	Protein	2007	18288329	Ramanathan Sowdhamini	mini@ncbs.res.in	National Center for Biological Sciences (NCBS)	Bangalore	Karnataka	NCBS	Functional	Prediction	NA
1441	PPCheck	A webserver for identification of non-covalent interactions at the interface of a protein-protein complex	http://caps.ncbs.res.in/ppcheck/	Bioinformatics and biology insights	Protein Function	Protein	2015	26448684	Ramanathan Sowdhamini	mini@ncbs.res.in	National Center for Biological Sciences (NCBS)	Bangalore	Karnataka	NCBS	Functional	Prediction	bio.tools
1442	EcRBPome	A Comprehensive Database of All Known E. Coli RNA-binding Proteins	http://caps.ncbs.res.in/ecrbpome/	BMC Bioinformatics	Protein Function	RNA	2019	31117939	Ramanathan Sowdhamini	mini@ncbs.res.in	National Center for Biological Sciences (NCBS)	Bangalore	Karnataka	NCBS	Functional	Database	bio.tools
1444	dbSweet	Design mutational experiments and simulation studies that will aid to advance our understanding of the physiological role of SWEET homologs	http://bioinfo.iitk.ac.in/bioinfo/dbsweet/Home	Journal of molecular biology	Protein Function	Other	2018	29665371	Ramasubbu Sankararamakrishnan	sankar@iitk.ac.in	Indian Institute of Technology (IIT K)	Kanpur	Uttar Pradesh	IIT	Functional	Database	NA
1447	PRDBv2	A non-redundant protein-RNA docking benchmark version 2.0	http://www.csb.iitkgp.ac.in/applications/PRDBv2	Proteins	Protein Function	RNA	2017	27862282	Ranjit Prasad Bahadur	r.bahadur@hijli.iitkgp.ernet.in	Indian Institute of Technology (IIT KGP)	Kharagpur	West Bengal	IIT	Functional	Prediction	NA
1448	Layers	A molecular surface peeling algorithm and its applications to analyze protein structures	http://www.csb.iitkgp.ac.in/applications/mol_layers/main	Scientific Reports	Protein Structure Protein Function	Protein	2015	26553411	Ranjit Prasad Bahadur	r.bahadur@hijli.iitkgp.ernet.in	Indian Institute of Technology (IIT KGP)	Kharagpur	West Bengal	IIT	Functional	Prediction	NA
1454	PreFRP	Prediction and visualization of fluctuation residues in proteins	http://www.mpi.edu.in/prefrp/link.html	Journal of natural science , biology and medicine	Protein Function	Protein	2016	27433060	Renganathan Senthil	rsenthil@mpi.edu.in	The Marudupandiyar Institutions	Thanjavur	Tamil Nadu	Other	Functional	Prediction	NA
1455	CQNR	Cluster Quality Based Non-Reductional (CQNR) Oversampling Technique and Effector Protein Predictor Based on 3D Structure (EPP3D) of Proteins	http://projectphd.droppages.com/CQNR.html	Computers in Biology and Medicine	Protein Function	Protein	2019	31419629	Rishika Sen Somnath Tagore Rajat K De	rishikasen_r@isical.ac.in somnath.tagore@biu.ac.il raja	Indian Statistical Institute (ISI)	Kolkata	West Bengal	ISI	Functional	Prediction	bio.tools
1460	PredictSuperFam-PSS-3D1D	Prediction method for superfamily predictuion of twilight zone proteins	http://bioinfo.bdu.ac.in/psfpss	Journal of structural biology	Protein Function	Protein	2020	32081792	S Parthasarathy	bdupartha@gmail.com	Bharathidasan University	Tiruchirappalli	Tamil Nadu	Other	Functional	Prediction	NA
1461	DbTFLC	Data repository and analytical platform for systematic collection, curation of TFs and their interacting partners	http://www.vit.ac.in/files/database/Home.php	Journal of cellular biochemistry	Protein Function Interactome	Other	2017	29236308	S Sajitha Lulu	ssajithalulu@vit.ac.in	VIT University	Vellore	Tamil Nadu	VIT	Functional	Database	NA
1463	SSPred	A prediction server based on SVM for the identification and classification of proteins involved in bacterial secretion systems	http://www.bioinformatics.org/sspred/html/sspred.html	Bioinformation	Protein Function	Protein	2011	21904425	Sachin Pundhir	sachbinfo@gmail.com	Devi Ahilya University	Indore	Madhya Pradesh	Other	Functional	Prediction	bio.tools
1465	SPEER-SERVER	A web server for prediction of protein specificity determining sites	http://www.hpppi.iicb.res.in/ss/	Nucleic Acids Research	Protein Function	Protein	2012	22689646	Saikat Chakrabarti	saikat273@gmail.com	CSIR - Indian Institute of Chemical Biology (CSIR-IICB)	Kolkata	West Bengal	CSIR	Functional	Prediction	bio.tools
1472	BioDB extractor	Customized data extraction system for commonly used bioinformatics databases	http://bioinfo.net.in/BioDB/Home.html	Biodata Mining	Protein Function	Other	2015	26516349	Sangeeta Sawant	sangeeta@bioinfo.net.in	Savitribai Phule Pune University	Pune	Maharashtra	Other	Functional	Database	NA
1473	MBSTAR	Multiple instance learning for predicting specific functional binding sites in microRNA targets	http://www.isical.ac.in/~bioinfo_miu/MBStar30.htm	Scientific Reports	Protein Function	RNA	2015	25614300	Sanghamitra Bandyopadhyay	sanghami@isical.ac.in	Indian Statistical Institute (ISI)	Kolkata	West Bengal	ISI	Functional	Prediction	bio.tools
1484	Oxypred2	Harnessing the evolutionary information on oxygen binding proteins through Support Vector Machines based modules	http://bioinfo.imtech.res.in/servers/muthu/oxypred2/home.html	BMC Research Notes	Protein Function	Protein	2018	29751818	Selvaraj Muthukrishnan Munish Puri	muthu@imtech.res.in mpuri@pbi.ac.in	CSIR - Institute of Microbial Technology (CSIR-IMTECH)	Chandigarh	Chandigarh	CSIR	Functional	Prediction	NA
1503	ARC	Automated resource classifier for agglomerative functional classification of prokaryotic proteins using annotation texts	http://arc.igib.res.in/	Journal of biosciences	Protein Function	Protein	2007	17914236	Srinivasan Ramachandran	ramuigib@gmail.com	CSIR - Institute of Genomics and Integrative Biology (CSIR-IGIB)	New Delhi	New Delhi	CSIR	Functional	Prediction	bio.tools
1505	FunPred-1	Protein function prediction from a protein interaction network using neighborhood analysis	http://code.google.com/p/cmaterbioinfo/	Cellular and molecular biology letters	Protein Function Interactome	Protein	2014	25424913	Subhadip Basu	subhadip@cse.jdvu.ac.in	Jadavpur University	Kolkata	West Bengal	Other	Functional	Prediction	NA
1510	MYCbase	Collection of experimentally supported functional sites in Myc that can influence the biological cellular processes	http://bicresources.jcbose.ac.in/ssaha4/mycbase	BMC Bioinformatics	Protein Function	Other	2017	28454513	Sudipto Saha	ssaha4@gmail.com	Bose Institute	Kolkata	West Bengal	Other	Functional	Database	NA