Browse result page of IndioBioDb
The total number entries retrieved from this search are 199
| ID | Resource Name | Resource Description | Resource Link | Journal | Class | Source | Year of Publication | PMID | Corresponding Author | Institute | City | State | Functional Status | Funding Agency | Resource category | Other Repository | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1241 | ECGPred | Analsis of expresion data and correlation between gene expression and nucleotides composition of genes. | https://webs.iiitd.edu.in/raghava/ecgpred/ | BMC Bioinformatics | Genomics | Other | 2005 | doi:10.2174/1875036200802010064 | Gajendra PS Raghava | raghava@iiitd.ac.in | CSIR - Institute of Microbial Technology (CSIR-IMTECH) | Chandigarh | Chandigarh | CSIR | Functional | Prediction | BTISNet |
| 1252 | EGPred | Prediction of eukaryotic genes using ab initio methods after combining with sequence similarity approaches | http://www.imtech.res.in/raghava/egpred/ | Genome research | Genomics | DNA | 2004 | 15342559 | Gajendra PS Raghava | raghava@iiitd.ac.in | CSIR - Institute of Microbial Technology (CSIR-IMTECH) | Chandigarh | Chandigarh | CSIR | Functional | Prediction | BTISNet |
| 1259 | FTG | Locating probable protein coding region in nucleotide sequence using FFT based algorithm | http://crdd.osdd.net/raghava/ftg/ | Bioinformatics | Genomics | Protein | 2002 | 11836230 | Gajendra PS Raghava | raghava@iiitd.ac.in | CSIR - Institute of Microbial Technology (CSIR-IMTECH) | Chandigarh | Chandigarh | CSIR | Functional | Prediction | BTISNet |
| 1265 | CancerLivER | A database of liver cancer gene expression and biomarkers | http://webs.iiitd.edu.in/raghava/cancerliver/ | Database: The Journal of Biological Databases and Curation | Genomics | Other | 2020 | 32147717 | Gajendra PS Raghava | raghava@iiitd.ac.in | Indraprastha Institute of Information Technology (IIITD) | New Delhi | New Delhi | IIIT | Functional | Database | NA |
| 1268 | CRCRpred | Risk score prediction of colorectal cancer from the proteins involved in mitochondrial apoptotic pathway | http://webs.iiitd.edu.in/raghava/sambinder/ | PLOS One | Genomics | Protein | 2019 | 31498794 | Gajendra PS Raghava | raghava@iiitd.ac.in | Indraprastha Institute of Information Technology (IIITD) | New Delhi | New Delhi | IIIT | Functional | Prediction | bio.tools |
| 1269 | CancerSPP | Prediction of skin cutaneous melanoma using genomics profile | https://webs.iiitd.edu.in/raghava/cancerspp/ | Scientific Reports | Genomics | Other | 2019 | 31673075 | Gajendra PS Raghava | raghava@iiitd.ac.in | Indraprastha Institute of Information Technology (IIITD) | New Delhi | New Delhi | IIIT | Functional | Database | bio.tools |
| 1270 | HCCpred | Method for Biomarker identification for hepatocellular carcinoma | https://webs.iiitd.edu.in/raghava/cancerspp/ | Frontiers in Genetics | Genomics | Other | 2020 | 31998366 | Gajendra PS Raghava | raghava@iiitd.ac.in | Indraprastha Institute of Information Technology (IIITD) | New Delhi | New Delhi | IIIT | Functional | Prediction | bio.tools |
| 1276 | HGEx-ERdb | A revisit to functional genomics studies on human endometrium and creation of HGEx-ERdb | http://resource.ibab.ac.in/HGEx-ERdb/ | PLOS One | Genomics | DNA | 2013 | 23555582 | Geetanjali Sachdeva | sachdevag@nirrh.res.in | ICMR - National Institute for Research in Reproductive Health (NIRRH) | Mumbai | Maharashtra | ICMR | Functional | Database | NA |
| 1281 | Coffee Genome Hub | It had 22 matches to different pectate lyase genes mapped on 9 of the 11 pseudochromosomes, the top match being Cc07_g00190 Pectate lyase | http://coffee-genome.org/ | 3 Biotech | Genomics | DNA | 2017 | 28444590 | H L Sreenath | sreenath.lakkanna@gmail.com | Central Coffee Research Institute (CCRI) | Mysore | Karnataka | Other | Functional | Database | bio.tools |
| 1284 | MICdb3.0 | A comprehensive resource of microsatellite repeats from prokaryotic genomes | http://www.cdfd.org.in/micas | Database: The Journal of Biological Databases and Curation | Genomics | DNA | 2014 | 24536078 | Hampapathalu A Nagarajaram | han@cdfd.org.in | Grandhi Varalakshmi Venkatarao Institute of Technology | Bhimavaram | Andhra Pradesh | Other | Functional | Database | NA |
| 1285 | IMEx | Imperfect Microsatellite Extractor | http://43.227.129.132:8008/IMEX/ | Bioinformatics | Genomics | DNA | 2007 | 17379689 | Hampapathalu A Nagarajaram | han@cdfd.org.in | CSIR - Centre for DNA Fingerprinting and Diagnostics (CSIR-CDFD) | Hyderabad | Telangana | CSIR | Functional | Prediction | bio.tools |
| 1286 | MICAS | Database of prokaryotic microsatellites | http://www.cdfd.org.in/micas | Nucleic Acids Research | Genomics | DNA | 2003 | 12519959 | Hampapathalu A Nagarajaram | han@cdfd.org.in | CSIR - Centre for DNA Fingerprinting and Diagnostics (CSIR-CDFD) | Hyderabad | Telangana | CSIR | Functional | Database | NA |
| 1287 | matK-QR classifier | A patterns based approach for plant species identification | http://www.neeri.res.in/matk_classifier/index.htm | Biodata Mining | Genomics | Other | 2015 | 27990177 | Hemant J Purohit | hj_purohit@neeri.res.in | CSIR - National Environmental Engineering Research Institute (CSIR-NEERI) | Nagpur | Maharashtra | CSIR | Functional | Prediction | NA |
| 1288 | CSIdesigner | An siRNA designing tool with a unique functional off:target filtering approach | http://gyanxet-beta.com/ | Journal of biomolecular structure and dynamics | Genomics | RNA | 2012 | 23140209 | J Chakrabarti | j.chakrabarti@gyanxet.com | Indian Association for the Cultivation of Science (IACS) | Kolkata | West Bengal | IACS | Functional | Prediction | NA |
| 1289 | WildSilkbase | An EST database of wild silkmoths | http://www.cdfd.org.in/wildsilkbase/ | BMC Genomics | Genomics | Other | 2008 | 18637161 | J Nagaraju | jnagaraju@cdfd.org.in | CSIR - Centre for DNA Fingerprinting and Diagnostics (CSIR-CDFD) | Hyderabad | Telangana | CSIR | Functional | Database | NA |
| 1291 | ANGDelMut | A web-based tool for predicting and analyzing functional loss mechanisms of amyotrophic lateral sclerosis:associated angiogenin mutations | http://bioschool.iitd.ernet.in/DelMut/ | F1000 research | Genomics Vaccinomics | Other | 2013 | 24555108 | James Gomes | jgomes@bioschool.iitd.ac.in | Indian Institute of Technology (IIT D) | New Delhi | New Delhi | IIT | Functional | Prediction | NA |
| 1292 | FMIMS | Identifying relevant group of miRNAs in cancer using fuzzy mutual information | http://www.jayanta.droppages.com/FMIMS.html | Medical & biological engineering& computation | Genomics | RNA | 2016 | 26264058 | Jayanta Kumar Pal | jkp_it08@yahoo.com | Indian Statistical Institute (ISI) | Kolkata | West Bengal | ISI | Functional | Prediction | NA |
| 1293 | LeptoDB | LeptoDB facilitates well-structured knowledge of genomics, proteomics and therapeutic aspects with more than 500 assemblies including 17 complete and 496 draft genomes encoding 1.7 million proteins for 23 Leptospira species with more than 250 serovars comprising pathogenic, intermediate and saprophytic strains | http://leptonet.org.in | Database: The Journal of Biological Databases and Curation | Genomics Vaccinomics | Protein | 2018 | 29905762 | Jayashankar Das | jayshankardas@gmail.com | Gujarat Biotechnology Research Centre | Gandhinagar | Gujrat | Other | Functional | Database | NA |
| 1294 | DBDiaSNP | An Open-Source Knowledgebase of Genetic Polymorphisms and Resistance Genes Related to Diarrheal Pathogens | http://www.juit.ac.in/attachments/dbdiasnp/ | Omics | Cheminformatics Genomics | DNA | 2015 | 25978092 | Jayashree Ramana | jayashree.ramana@juit.ac.in | Jaypee University of Information Technology (JUIT) | Solan | Himachal Pradesh | JUIT | Functional | Database | NA |
| 1295 | RCDB | Renal Cancer Gene Database | http://www.juit.ac.in/attachments/jsr/rcdb/homenew.html | BMC Research Notes | Genomics Vaccinomics | DNA | 2012 | 22608002 | Jayashree Ramana | jayashree.ramana@juit.ac.in | Jaypee University of Information Technology (JUIT) | Solan | Himachal Pradesh | JUIT | Functional | Database | NA |
| 1297 | lnCeDB | Database of human long noncoding RNA acting as competing endogenous RNA | http://gyanxet-beta.com/lncedb/ | PLOS One | Genomics | RNA | 2014 | 24926662 | Jayprokas Chakrabarti | j.chakrabarti@gyanxet.com | Indian Association for the Cultivation of Science (IACS) | Kolkata | West Bengal | IACS | Functional | Database | NA |
| 1299 | Circ2Traits | A comprehensive database for circular RNA potentially associated with disease and traits | http://gyanxet-beta.com/circdb/ | Frontiers in genetics | Genomics Vaccinomics | RNA | 2013 | 24339831 | Jayprokas Chakrabarti | j.chakrabarti@gyanxet.com | Indian Association for the Cultivation of Science (IACS) | Kolkata | West Bengal | IACS | Functional | Database | NA |
| 1303 | Glaucoma Pred | Glaucoma prediction based on Myocilin genotype and phenotype information | http://bioserver1.physics.iisc.ac.in/myocilin | Genomics | Genomics | Other | 2018 | 29665417 | K Sekar | sekar@iisc.ac.in | Indian Institute of Science (IISc) | Bangalore | Karnataka | IISc | Functional | Prediction | NA |
| 1307 | SEM | A web based GUI to generate and visualize the macromolecules | http://dicsoft2.physics.iisc.ernet.in/sem/ | Nucleic Acids Research | Genomics | Other | 2003 | 12824326 | K Sekar | sekar@physics.iisc.ernet.in | Indian Institute of Science (IISc) | Bangalore | Karnataka | IISc | Functional | Prediction | bio.tools, BTISNet |
| 1310 | Junker | An intergenic explorer for bacterial genomes | http://pranag.physics.iisc.ernet.in/junker/ | Genomics, Proteomics & Bioinformatics | Genomics | DNA | 2011 | 22196361 | K Sekar | sekar@physics.iisc.ernet.in | Indian Institute of Science (IISc) | Bangalore | Karnataka | IISc | Functional | Database | NA |
| 1311 | FAIR | A server for internal sequence repeats | http://bioserver1.physics.iisc.ernet.in/fair/ | Bioinformation | Genomics | DNA | 2010 | 20978598 | K Sekar | sekar@physics.iisc.ernet.in | Indian Institute of Science (IISc) | Bangalore | Karnataka | IISc | Functional | Prediction | NA |
| 1313 | RepEx | A method for repeat extraction | http://bioserver2.physics.iisc.ac.in/RepEx/ | Computational Biology and Chemistry | Genomics | Other | 2019 | 30598392 | K Sekar | sekar@iisc.ac.in | Indian Institute of Science (IISc) | Bangalore | Karnataka | IISc | Functional | Prediction | bio.tools |
| 1316 | 1-CMDb | Platform to interrogate its association with a host of human disorders | http://slsdb.manipal.edu/ocm | Public health genomics | Genomics | Other | 2017 | 28511181 | Kapaettu Satyamoorthy | ksatyamoorthy@manipal.edu | Manipal University | Manipal | Karnataka | Other | Functional | Database | NA |
| 1320 | GREAM | A Web Server to Short-List Potentially Important Genomic Repeat Elements Based on Over-/Under-Representation in Specific Chromosomal Locations, Such as the Gene Neighborhoods, within or across 17 Mammalian Species | http://resource.ibab.ac.in/GREAM/ | PLOS One | Genomics | DNA | 2015 | 26208093 | Kshitish K Acharya | kshitish@ibab.ac.in | Institute of Bioinformatics and Applied Biotechnology (IBAB) | Bangalore | Karnataka | IBAB | Functional | Prediction | bio.tools |
| 1321 | TIPMaP | A web server to establish transcript isoform profiles from reliable microarray probes | http://resource.ibab.ac.in/TIPMaP | BMC Genomics | Genomics | Other | 2013 | 24373374 | Kshitish K Acharya | kshitish@ibab.ac.in | Institute of Bioinformatics and Applied Biotechnology (IBAB) | Bangalore | Karnataka | IBAB | Functional | Prediction | NA |
| 1322 | MGEx-Udb | A mammalian uterus database for expression-based cataloguing of genes across conditions, including endometriosis and cervical cancer | http://resource.ibab.ac.in/MGEx-Udb/ | PLOS One | Genomics | DNA | 2012 | 22606288 | Kshitish K Acharya | kshitish@ibab.ac.in | Institute of Bioinformatics and Applied Biotechnology (IBAB) | Bangalore | Karnataka | IBAB | Functional | Database | NA |
| 1323 | MGEx-Tdb | A novel tissue-specific meta-analysis approach for gene expression predictions, initiated with a mammalian gene expression testis database | http://resource.ibab.ac.in/MGEx-Tdb/ | BMC Genomics | Genomics | DNA | 2010 | 20699007 | Kshitish K Acharya | kshitish@ibab.ac.in | Institute of Bioinformatics and Applied Biotechnology (IBAB) | Bangalore | Karnataka | IBAB | Functional | Database | NA |
| 1325 | IGDD | Indian genetic disease database | http://www.igdd.iicb.res.in | Nucleic Acids Research | Genomics | DNA | 2011 | 21037256 | Kunal Ray | kunalray@gmail.com | CSIR - Indian Institute of Chemical Biology (CSIR-IICB) | Kolkata | West Bengal | CSIR | Functional | Database | bio.tools |
| 1326 | NPLB | Learn de novo promoter architectures from genome-wide transcription start sites | https://github.com/NarlikarLab/NPLB | Bioinformatics | Genomics | DNA | 2016 | 26530723 | Leelavati Narlikar | l.narlikar@ncl.res.in | CSIR - National Chemical Laboratory (CSIR-NCL) | Pune | Maharashtra | CSIR | Functional | Prediction | NA |
| 1327 | OncomiRdbB | A comprehensive database of microRNAs and their targets in breast cancer | http://tdb.ccmb.res.in/OncomiRdbB/index.htm | BMC Bioinformatics | Genomics Vaccinomics | RNA | 2014 | 24428888 | Lekha Dinesh Kumar | lekha@ccmb.res.in | CSIR - Centre for Cellular and Molecular Biology (CSIR-CCMB) | Hyderabad | Telangana | CSIR | Functional | Database | NA |
| 1328 | LeukmiR | A database for miRNAs and their targets in Acute Lymphoblastic Leukemia | http://tdb.ccmb.res.in/LeukmiR/ | Database: The Journal of Biological Databases and Curation | Genomics | Other | 2020 | 32128558 | Lekha Dinesh Kumar | lekha@ccmb.res.in | CSIR - Centre for Cellular and Molecular Biology (CSIR-CCMB) | Hyderabad | Telangana | CSIR | Functional | Database | NA |
| 1330 | SilkSatDb | A microsatellite database of the silkworm, Bombyx mori | http://www.cdfd.org.in/silksatdb | Nucleic Acids Research | Genomics | DNA | 2005 | 15608226 | M D Prasad | jnagaraju@cdfd.org.in | CSIR - Centre for DNA Fingerprinting and Diagnostics (CSIR-CDFD) | Hyderabad | Telangana | CSIR | Functional | Database | NA |
| 1331 | CREMOFAC | A database of chromatin remodeling factors | http://www.jncasr.ac.in/cremofac/ | Bioinformatics | Genomics | DNA | 2006 | 17021159 | M R S Rao | mrsrao@jncasr.ac.in | Jawaharlal Nehru Centre for Advanced Scientific Research (JNCASR) | Bangalore | Karnataka | Other | Functional | Database | NA |
| 1337 | LeishMicrosatDB | Open source database of repeat sequences detected in six fully sequenced Leishmania genomes | http://biomedinformri.com/leishmicrosat | Database: The Journal of Biological Databases and Curation | Genomics | DNA | 2014 | 25125444 | Manas R Dikhit | manasranjandikhit@gmail.com | ICMR - Rajendra Memorial Research Institute of Medical Sciences (RMRIMS) | Patna | Bihar | ICMR | Functional | Database | NA |
| 1338 | PromBase | A web resource for various genomic features and predicted promoters in prokaryotic genomes | http://nucleix.mbu.iisc.ernet.in/prombase/ | BMC Research Notes | Genomics | DNA | 2011 | 21781326 | Manju Bansal | mb@mbu.iisc.ernet.in | Indian Institute of Science (IISc) | Bangalore | Karnataka | IISc | Functional | Prediction | NA |
| 1343 | saRNAdb | Contains 2150 manually curated saRNA entries with detailed information about their nucleotide sequences, activities, corresponding target gene, promoter and other experimental data. Besides, saRNA-promoter binding location, predicted saRNA features, tools (off-target, map) and RNAa-related proteins with their interacting partners are provided | http://bioinfo.imtech.res.in/manojk/sarna/ebb.php | Journal of molecular biology | Genomics | RNA | 2018 | 29625201 | Manoj Kumar | manojk@imtech.res.in | CSIR - Institute of Microbial Technology (CSIR-IMTECH) | Chandigarh | Chandigarh | CSIR | Functional | Database | NA |
| 1345 | ASPsiRNA | A Resource of ASP-siRNAs Having Therapeutic Potential for Human Genetic Disorders and Algorithm for Prediction of Their Inhibitory Efficacy | http://crdd.osdd.net/servers/aspsirna/ | G3 bethesda | Genomics | RNA | 2017 | 28696921 | Manoj Kumar | manojk@imtech.res.in | CSIR - Institute of Microbial Technology (CSIR-IMTECH) | Chandigarh | Chandigarh | CSIR | Functional | Prediction | NA |
| 1347 | siRNAmod | Database of experimentally validated chemically modified siRNAs | http://crdd.osdd.net/servers/sirnamod | Scientific Reports | Genomics | RNA | 2016 | 26818131 | Manoj Kumar | manojk@imtech.res.in | CSIR - Institute of Microbial Technology (CSIR-IMTECH) | Chandigarh | Chandigarh | CSIR | Functional | Database | NA |
| 1348 | ge-CRISPR | An integrated pipeline for the prediction and analysis of sgRNAs genome editing efficiency for CRISPR/Cas system | http://bioinfo.imtech.res.in/manojk/gecrispr/ | Scientific Reports | Genomics | RNA | 2016 | 27581337 | Manoj Kumar | manojk@imtech.res.in | CSIR - Institute of Microbial Technology (CSIR-IMTECH) | Chandigarh | Chandigarh | CSIR | Functional | Prediction | NA |
| 1349 | SMEpred | Webserver will be useful to scientific community engaged in use of RNAi-based technology as well as for therapeutic development | http://bioinfo.imtech.res.in/manojk/smepred | RNA biology (Taylor and Francic Group) | Genomics | RNA | 2016 | 27603513 | Manoj Kumar | manojk@imtech.res.in | CSIR - Institute of Microbial Technology (CSIR-IMTECH) | Chandigarh | Chandigarh | CSIR | Functional | Database | NA |
| 1353 | VIRmiRNA | Comprehensive resource for experimentally validated viral miRNAs and their targets | http://crdd.osdd.net/servers/virmirna | Database: The Journal of Biological Databases and Curation | Genomics | RNA | 2014 | 25380780 | Manoj Kumar | manojk@imtech.res.in | CSIR - Institute of Microbial Technology (CSIR-IMTECH) | Chandigarh | Chandigarh | CSIR | Functional | Database | NA |
| 1355 | VIRsiRNApred | A web server for predicting inhibition efficacy of siRNAs targeting human viruses | http://crdd.osdd.net/servers/virsirnapred/ | Journal of Translational Medicine | Genomics | RNA | 2013 | 24330765 | Manoj Kumar | manojk@imtech.res.in | CSIR - Institute of Microbial Technology (CSIR-IMTECH) | Chandigarh | Chandigarh | CSIR | Functional | Prediction | NA |
| 1356 | VIRsiRNAdb | A curated database of experimentally validated viral siRNA/shRNA | http://crdd.osdd.net/servers/virsirnadb | Nucleic Acids Research | Genomics | RNA | 2012 | 22139916 | Manoj Kumar | manojk@imtech.res.in | CSIR - Institute of Microbial Technology (CSIR-IMTECH) | Chandigarh | Chandigarh | CSIR | Functional | Database | bio.tools |
| 1358 | HIVsirDB | A database of HIV inhibiting siRNAs | http://crdd.osdd.net/raghava/hivsir/ | PLOS One | Genomics | RNA | 2011 | 22022467 | Manoj Kumar | manojk@imtech.res.in | CSIR - Institute of Microbial Technology (CSIR-IMTECH) | Chandigarh | Chandigarh | CSIR | Functional | Database | NA |
| 1359 | HPVbase | A knowledgebase of viral integrations, methylation patterns and microRNAs aberrant expression: As potential biomarkers for Human papillomaviruses mediated carcinomas | http://crdd.osdd.net/servers/hpvbase/ | Scientific Reports | Genomics | RNA | 2015 | 26205472 | Manoj Kumar | manojk@imtech.res.in | CSIR - Institute of Microbial Technology (CSIR-IMTECH) | Chandigarh | Chandigarh | CSIR | Functional | Prediction | NA |