Browse result page of IndioBioDb
The total number entries retrieved from this search are 199
| ID | Resource Name | Resource Description | Resource Link | Journal | Class | Source | Year of Publication | PMID | Corresponding Author | Institute | City | State | Functional Status | Funding Agency | Resource category | Other Repository | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1001 | TRABAS | A database for transcription regulation by ABA signaling | http://www.bioinformatics.org/trabas/ | In Silico biology | Genomics | DNA | 2008 | 19374134 | A Choudhury | ananyo.c@gmail.com | University of Calcutta | Kolkata | West Bengal | Other | Functional | Database | NA |
| 1006 | MaLDoSS | Prediction of donor splice sites using random forest with a new sequence encoding approach | http://cabgrid.res.in:8080/maldoss | Biodata Mining | Genomics | Other | 2016 | 26807151 | A R Rao | rao.cshl.work@gmail.com | ICAR - Indian Agricultural Statistics Research Institute (IASRI) | New Delhi | New Delhi | ICAR | Functional | Prediction | NA |
| 1007 | HSplice | Identification of Donor Splice Sites Using Support Vector Machine: A Computational Approach Based on Positional, Compositional and Dependency Features | http://cabgrid.res.in:8080/HSplice | Algorithms for molecular biology: AMB | Genomics | Other | 2016 | 27252772 | A R Rao | rao.cshl.work@gmail.com | ICAR - Indian Agricultural Statistics Research Institute (IASRI) | New Delhi | New Delhi | ICAR | Functional | Prediction | NA |
| 1008 | PreDOSS | A computational approach for prediction of donor splice sites with improved accuracy | http://cabgrid.res.in:8080/predoss | Journal of theoretical biology | Genomics | Other | 2016 | 27302911 | A R Rao | rao.cshl.work@gmail.com | ICAR - Indian Agricultural Statistics Research Institute (IASRI) | New Delhi | New Delhi | ICAR | Functional | Prediction | NA |
| 1009 | SPIDBAR | Identification of species based on DNA barcode using k-mer feature vector and Random forest classifier | http://cabgrid.res.in:8080/spidbar/ | Gene | Genomics | DNA | 2016 | 27393648 | A R Rao | rao.cshl.work@gmail.com | ICAR - Indian Agricultural Statistics Research Institute (IASRI) | New Delhi | New Delhi | ICAR | Functional | Prediction | NA |
| 1010 | dSSpred | A statistical approach for 5' splice site prediction using short sequence motifs and without encoding sequence data | http://cabgrid.res.in:8080/sspred | BMC Bioinformatics | Genomics | DNA | 2014 | 25420551 | A R Rao | rao.cshl.work@gmail.com | ICAR - Indian Agricultural Statistics Research Institute (IASRI) | New Delhi | New Delhi | ICAR | Functional | Prediction | NA |
| 1012 | CbLncRNAdb | Computationally identify lncRNAs based on a proposed index and study their targeted genes | http://cabgrid.res.in/cblncrnadb | Nucleic Acids Research | Genomics | RNA | 2018 | 29753807 | A R Rao | ar.rao@icar.gov.in | ICAR - Indian Agricultural Statistics Research Institute (IASRI) | New Delhi | New Delhi | ICAR | Functional | Database | NA |
| 1013 | funbarRF | DNA barcode-based fungal species prediction using multiclass Random Forest supervised learning model | http://cabgrid.res.in:8080/funbarrf/ | BMC Genomics | Genomics | DNA | 2019 | 30616524 | A R Rao | rao.cshl.work@gmail.com | ICAR - Indian Agricultural Statistics Research Institute (IASRI) | New Delhi | New Delhi | ICAR | Functional | Prediction | NA |
| 1015 | Fish Karyome Version 2.1 | A Chromosome Database of Fishes and Other Aquatic Organisms | http://mail.nbfgr.res.in/Fish_Karyome | Database: The Journal of Biological Databases and Curation | Genomics | DNA | 2016 | 26980518 | Ajey Kumar Pathak | pathakajey@rediffmail.com | ICAR - National Bureau of Fish Genetic Resources (NBFGR) | Lucknow | Uttar Pradesh | ICAR | Functional | Database | NA |
| 1018 | PathBuilder | Open source software for annotationg and developing pathway resourcse | http://pathbuilder.sourceforge.net/index.html | Bioinformatics | Genomics | Protein | 2009 | 19628504 | Akhilesh Pandey | pandey@jhmi.edu | Institute of Bioinformatics (IOB) | Bangalore | Karnataka | IOB | Functional | Database | NA |
| 1025 | TMC-SNPPdb | An Indian Germline Variant Database Derived From Whole Exome Sequences | http://www.actrec.gov.in/pi-webpages/AmitDutt/TMCSNP/TMCSNPdp.html | Database: The Journal of Biological Databases and Curation | Genomics | Other | 2016 | 27402678 | Amit Dutt | adutt@actrec.gov.in | Advanced Centre for Treatment Research and Education in Cancer (ACTREC) Tata Memorial Centre | Mumbai | Maharashtra | ACTREC | Functional | Database | NA |
| 1026 | HPVdetector | NGS-based approach to determine the presence of HPV and their sites of integration in human cancer genome | http://www.actrec.gov.in/pi-webpages/AmitDutt/HPVdetector/HPVDetector.html | British journal of cancer | Vaccinomics Interactome Genomics | DNA | 2015 | 25973533 | Amit Dutt | adutt@actrec.gov.in | Advanced Centre for Treatment Research and Education in Cancer (ACTREC) Tata Memorial Centre | Mumbai | Maharashtra | ACTREC | Functional | Prediction | NA |
| 1027 | DeepRanker | Method for identifying cancer driver genes from functional genomic screens | http://www.actrec.gov.in/pi-webpages/AmitDutt/DepRanker/DepRanker.html | Swiss Medical Weekly | Genomics | Other | 2020 | 32083704 | Amit Dutt | adutt@actrec.gov.in | Advanced Centre for Treatment Research and Education in Cancer (ACTREC) Tata Memorial Centre | Mumbai | Maharashtra | ACTREC | Functional | Prediction | NA |
| 1031 | EMSgardeN22 | Database maintaining functional genomics information of Nagina 22, a popular drought- and heat-tolerant upland cultivar | http://14.139.229.201/EMSgardeN22 | Frontiers in plant science | Genomics | Other | 2018 | 30233603 | Amitha M V Sevanthi | amithamithra.nrcpb@gmail.com | ICAR - National Research Centre on Plant Biotechnology (NRCPB) | New Delhi | New Delhi | ICAR | Functional | Database | NA |
| 1032 | RiceMetaSys | Provides comprehensive information on salt responsive genes (SRGs) and drought responsive genes (DRGs) across genotypes, crop development stages and tissues, identified from multiple microarray datasets | http://14.139.229.201 | BMC Bioinformatics | Genomics Protein Function | DNA | 2017 | 28964253 | Amitha Mithra S V | amithamithra.nrcpb@gmail.com | ICAR - National Research Centre on Plant Biotechnology (NRCPB) | New Delhi | New Delhi | ICAR | Functional | Database | NA |
| 1035 | AtREA | Arabidopsis thaliana regulatory element analyzer | http://www.bioinformatics.org/grn/atrea.html | International society for computational biology | Genomics | Other | 2008 | 18694893 | Ananyo Choudhury | ananyo.c@gmail.com | University of Calcutta | Kolkata | West Bengal | Other | Functional | Prediction | NA |
| 1039 | MtBrowse | An integrative genomics browser for human mitochondrial DNA | http://ab-openlab.csir.res.in/cgi-bin/gb2/gbrowse/mitolink/ | Mitochondrion | Genomics Interactome | Protein | 2019 | 30738202 | Anshu Bhardwaj | anshub@osdd.net | CSIR - Institute of Microbial Technology (CSIR-IMTECH) | Chandigarh | Chandigarh | CSIR | Functional | Database | NA |
| 1040 | dbGAPs | Contains annotation for 202 manually curated genes associated with psoriasis and its subtypes with cross-references | http://www.bmicnip.in/dbgaps/ | Genomics | Genomics Vaccinomics | DNA | 2017 | 29031638 | Arun Kumar Jain | akjain@instpath.gov.in | ICMR - National Institute of Pathology (NIP) | New Delhi | New Delhi | ICMR | Functional | Database | NA |
| 1053 | TPACM4 | A fast empirical GAFF compatible partial atomic charge assignment scheme for modeling interactions of small molecules with biomolecular targets | http://www.scfbio-iitd.res.in/software/drugdesign/charge.jsp | Journal of Computational Chemistry | Genomics | Other | 2011 | 21341292 | B Jayaram | bjayaram@chemistry.iitd.ac.in | Indian Institute of Technology (IIT D) | New Delhi | New Delhi | IIT | Functional | Prediction | NA |
| 1057 | SEProm | A method for predicting prokaryotic promoter based on DNA structure and energetics | http://www.scfbio-iitd.res.in/PvaxDB/ | Bioinformatics | Genomics | Other | 2020 | 31909789 | B Jayaram | bjayaram@chemistry.iitd.ac.in | Indian Institute of Technology (IIT D) | New Delhi | New Delhi | IIT | Functional | Prediction | NA |
| 1062 | PRIGSA | Protein repeat identification by graph spectral analysis | http://bioinf.iiit.ac.in/PRIGSA/ | Journal of bioinformatics and computational biology | Genomics | Protein | 2014 | 25385083 | Broto Chakrabarty Nita Parekh | broto.chakrabarty@research.iiit.ac.in nita@iiit.ac.in | International Institute of Information Technology (IIITH) | Hyderabad | Telangana | IIIT | Functional | Prediction | NA |
| 1063 | VDAP-GUI | A user-friendly pipeline for variant discovery and annotation of raw next-generation sequencing data | https://sourceforge.net/projects/vdapgui/ | 3 Biotech | Genomics | Other | 2016 | 28330138 | Chaitanya G Joshi | cgjoshi@aau.in | Anand Agricultural University | Anand | Gujrat | Other | Functional | Prediction | NA |
| 1065 | IIKmTA | Intra and inter kingdom miRNA transfer has boosted up the hypothesis about the potential impact of plant or animal miRNAs on each other | http://www.bioinformatics.org/iikmta/ | Interdisciplinary Sciences: Computational Life Sciences | Genomics | RNA | 2018 | 29549628 | Chittabrata Mal | cmal@kol.amity.edu | Amity University | Kolkata | West Bengal | Other | Functional | Database | NA |
| 1067 | RAmiRNA | Software suite for generation of SVMbased prediction models of mature miRNAs | http://ircb.iiita.ac.in | Bioinformation | Genomics Vaccinomics | RNA | 2012 | 22829735 | CVS Siva Prasad | shiva@iiita.ac.in | Indian Institute of Information Technology (IIIT-A) | Allahabad | Uttar Pradesh | IIIT | Functional | Prediction | NA |
| 1068 | IGVBrowser | A genomic variation resource from diverse Indian populations | http://igvbrowser.igib.res.in | Database: The Journal of Biological Databases and Curation | Genomics | Other | 2010 | 20843867 | Debasis Dash | ddash@igib.res.in | CSIR - Institute of Genomics and Integrative Biology (CSIR-IGIB) | New Delhi | New Delhi | CSIR | Functional | Database | NA |
| 1082 | PAmiRDB | Resource for plant miRNAs targeting viruses | http://bioinfo.icgeb.res.in/pamirdb | Scientific Reports | Genomics | RNA | 2019 | 30874591 | Dinesh Gupta | dinesh@icgeb.res.in | DBT - International Centre for Genetic Engineering and Biotechnology (ICGEB) | New Delhi | New Delhi | DBT | Functional | Database | NA |
| 1086 | miRMOD | A tool for identification and analysis of 5 and 3 miRNA modifications in Next Generation Sequencing small RNA data | http://bioinfo.icgeb.res.in/miRMOD/ | Peer J | Genomics | RNA | 2015 | 26623179 | Dinesh Gupta | dinesh@icgeb.res.in | DBT - International Centre for Genetic Engineering and Biotechnology (ICGEB) | New Delhi | New Delhi | DBT | Functional | Prediction | bio.tools |
| 1087 | plantVSupPred | Supervised learning classification models for prediction of plant virus encoded RNA silencing suppressors | http://bioinfo.icgeb.res.in/pvsup/ | PLOS One | Genomics | RNA | 2014 | 24828116 | Dinesh Gupta | dinesh@icgeb.res.in | DBT - International Centre for Genetic Engineering and Biotechnology (ICGEB) | New Delhi | New Delhi | DBT | Functional | Prediction | NA |
| 1092 | Duct-BRCA-CSP | Prediction method foe invasive ductal carcinoma progression based on gene expression data | http://bioinfo.icgeb.res.in/duct-BRCA-CSP | Scientific Reports | Genomics | RNA | 2020 | 32139710 | Dinesh Gupta | dinesh@icgeb.res.in | DBT - International Centre for Genetic Engineering and Biotechnology (ICGEB) | New Delhi | New Delhi | DBT | Functional | Prediction | NA |
| 1093 | iRSVPred | Artificial Intelligence based prediction method for identifying basmati paddy seed | http://14.139.62.220/rice/. | Frontiers in Plant Science | Genomics | Other | 2020 | 32158451 | Dinesh Gupta | dinesh@icgeb.res.in | DBT - International Centre for Genetic Engineering and Biotechnology (ICGEB) | New Delhi | New Delhi | DBT | Functional | Prediction | NA |
| 1095 | ApicoTFdb | The Comprehensive Web Repository of Apicomplexan Transcription Factors and Transcription-Associated Co-Factors | http://bioinfo.icgeb.res.in/PtDB/ | Database: The Journal of Biological Databases and Curation | Genomics | Other | 2019 | 31529106 | Dinesh Gupta | dinesh@icgeb.res.in | DBT - International Centre for Genetic Engineering and Biotechnology (ICGEB) | New Delhi | New Delhi | DBT | Functional | Database | bio.tools |
| 1096 | TamiRPred | Development of species specific putative miRNA and its target prediction tool in wheat | http://webtom.cabgrid.res.in/tamirpred | Scientific Reports | Genomics | RNA | 2019 | 30846812 | Dinesh Kumar | dinesh.kumar@icar.gov.in | ICAR - Indian Council of Agricultural Research | New Delhi | New Delhi | ICAR | Functional | Prediction | NA |
| 1097 | VmTDB | Development of transcriptome based web genomic resources of yellow mosaic disease in Vigna mungo | http://webtom.cabgrid.res.in/vmtdb/ | Physiology and molecular biology of plants: An international journal functional plant biology | Genomics | DNA | 2017 | 29158627 | Dinesh Kumar | dinesh.kumar@icar.gov.in | ICAR - Indian Agricultural Statistics Research Institute (IASRI) | New Delhi | New Delhi | ICAR | Functional | Prediction | NA |
| 1098 | TaSSR | Chromosome-wise SSR calling for all the three sub genomes along with choice of motif types is provided in addition to the primer generation for desired marker | http://webtom.cabgrid.res.in/wheatssr/ | Frontiers in plant science | Genomics | DNA | 2017 | 29234333 | Dinesh Kumar | dinesh.kumar@icar.gov.in | ICAR - Indian Council of Agricultural Research | New Delhi | New Delhi | ICAR | Functional | Database | NA |
| 1100 | SBMDb | First whole genome putative microsatellite DNA marker database of sugarbeet for bioenergy and industrial applications | http://webapp.cabgrid.res.in/sbmdb/. | Database: The Journal of Biological Databases and Curation | Genomics | DNA | 2015 | 26647370 | Dinesh Kumar | dineshkumarbhu@gmail.com | ICAR - Indian Agricultural Statistics Research Institute (IASRI) | New Delhi | New Delhi | ICAR | Functional | Database | NA |
| 1101 | SCMVTDb | A catalogue of putatuve markers, molecular markers, candidate genes and transcript information related to mosaic disease of small cardamom | http://webtom.cabgrid.res.in/scmvtdb | Genomics | Genomics | Other | 2020 | 31770586 | Dinesh Kumar | dinesh.kumar@icar.gov.in | ICAR - Indian Council of Agricultural Research | New Delhi | New Delhi | ICAR | Functional | Database | bio.tools |
| 1102 | PolyMorphPredict | A Universal Web-Tool for Rapid Polymorphic Microsatellite Marker Discovery From Whole Genome and Transcriptome Data | http://webtom.cabgrid.res.in/polypred/ | Frontiers in plant science | Genomics | DNA | 2019 | 30687361 | Dinesh Kumar | dinesh.kumar@icar.gov.in | ICAR - Indian Council of Agricultural Research | New Delhi | New Delhi | ICAR | Functional | Prediction | NA |
| 1103 | MiSNPDb | A Web-Based Genomic Resources of Tropical Ecology Fruit Mango (Mangifera Indica L.) for Phylogeography and Varietal Differentiation | http://webtom.cabgrid.res.in/mangosnps/ | Scientific Reports | Genomics | Other | 2017 | 29097776 | Dinesh Kumar | dinesh.kumar@icar.gov.in | ICAR - Indian Council of Agricultural Research | New Delhi | New Delhi | ICAR | Functional | Database | NA |
| 1104 | MSDB | Database is by far the most exhaustive resource to access and analyze SSR data of multiple species | http://tdb.ccmb.res.in/msdb | Genome biology and evolution | Genomics | Other | 2017 | 28854643 | Divya Tej Sowpati | tej@ccmb.res.in | CSIR - Centre for Cellular and Molecular Biology (CSIR-CCMB) | Hyderabad | Telangana | CSIR | Functional | Database | bio.tools |
| 1105 | CRISPcut | Tool for designing optimal sgRNAs for CRISPR/Cas9 based experiments in human cells | http://web.iitd.ac.in/crispcut | Genomics | Genomics | RNA | 2018 | 29605634 | Durai Sundar | sundar@dbeb.iitd.ac.in | Indian Institute of Technology (IIT D) | New Delhi | New Delhi | IIT | Functional | Prediction | NA |
| 1113 | HumCFS | A database of fragile sites in human chromosomes | http://webs.iiitd.edu.in/raghava/humcfs/ | BMC Genomics | Genomics | DNA | 2019 | 30999860 | Gajendra PS Raghava | raghava@iiitd.ac.in | Indraprastha Institute of Information Technology (IIITD) | New Delhi | New Delhi | IIIT | Functional | Database | bio.tools |
| 1117 | CancerLSP | Liver Heptacellular Carcinoma Stage Prediction | https://webs.iiitd.edu.in/raghava/cancerlsp/ | PLOS One | Genomics | Other | 2019 | 31490960 | Gajendra PS Raghava | raghava@iiitd.ac.in | Indraprastha Institute of Information Technology (IIITD) | New Delhi | New Delhi | IIIT | Functional | Database | bio.tools |
| 1127 | CancerCSP | Gene expression-based biomarkers for discriminating early and late stage of clear cell renal cancer | http://webs.iiitd.edu.in/raghava/cancercsp/ | Scientific Reports | Genomics | DNA | 2017 | 28349958 | Gajendra PS Raghava | raghava@iiitd.ac.in | Indraprastha Institute of Information Technology (IIITD) | New Delhi | New Delhi | IIIT | Functional | Prediction | NA |
| 1132 | dbEM | A database of epigenetic modifiers curated from cancerous and normal genomes | http://webs.iiitd.edu.in/raghava/dbem/# | Scientific Reports | Genomics | DNA | 2016 | 26777304 | Gajendra PS Raghava | raghava@iiitd.ac.in | CSIR - Institute of Microbial Technology (CSIR-IMTECH) | Chandigarh | Chandigarh | CSIR | Functional | Database | NA |
| 1145 | Cancertope | Wide range of tools are incorporated in this platform that includes screening of epitopes against human reference proteome | http://webs.iiitd.edu.in/raghava/cancertope/ | PLOS One | Genomics BioDrug | Protein | 2016 | 27832200 | Gajendra PS Raghava | raghava@iiitd.ac.in | CSIR - Institute of Microbial Technology (CSIR-IMTECH) | Chandigarh | Chandigarh | CSIR | Functional | Database | NA |
| 1156 | PCMdb | Pancreatic cancer methylation database | http://webs.iiitd.edu.in/raghava/pcmdb/ | Scientific Reports | Genomics | Other | 2014 | 24569397 | Gajendra PS Raghava | raghava@iiitd.ac.in | CSIR - Institute of Microbial Technology (CSIR-IMTECH) | Chandigarh | Chandigarh | CSIR | Functional | Database | NA |
| 1167 | CancerDR | Cancer drug resistance database | http://webs.iiitd.edu.in/raghava/cancerdr/ | Scientific Reports | Genomics BioDrug | Other | 2013 | 23486013 | Gajendra PS Raghava | raghava@iiitd.ac.in | CSIR - Institute of Microbial Technology (CSIR-IMTECH) | Chandigarh | Chandigarh | CSIR | Functional | Database | NA |
| 1181 | MARSpred | Predicting sub-cellular localization of tRNA synthetases from their primary structures | http://webs.iiitd.edu.in/raghava/marspred/ | Amino acids | Genomics Protein Function | RNA | 2012 | 21400228 | Gajendra PS Raghava | raghava@iiitd.ac.in | CSIR - Institute of Microbial Technology (CSIR-IMTECH) | Chandigarh | Chandigarh | CSIR | Functional | Prediction | BTISNet |
| 1196 | icaars | rediction and classification of aminoacyl tRNA synthetases using PROSITE domains | http://webs.iiitd.edu.in/raghava/icaars/ | BMC research | Genomics | RNA | 2010 | 20860794 | Gajendra PS Raghava | raghava@iiitd.ac.in | CSIR - Institute of Microbial Technology (CSIR-IMTECH) | Chandigarh | Chandigarh | CSIR | Functional | Prediction | BTISNet |
| 1234 | LGEpred | Correlation analysis and prediction of genes expression from amino acid sequence of proteins | http://webs.iiitd.edu.in/raghava/lgepred/ | BMC Bioinformatics | Genomics | Protein | 2005 | 15773999 | Gajendra PS Raghava | raghava@iiitd.ac.in | CSIR - Institute of Microbial Technology (CSIR-IMTECH) | Chandigarh | Chandigarh | CSIR | Functional | Prediction | bio.tools, BTISNet |