Browse result page of IndioBioDb
The total number entries retrieved from this search are 27
| ID | Resource Name | Resource Description | Resource Link | Journal | Class | Source | Year of Publication | PMID | Corresponding Author | Institute | City | State | Functional Status | Funding Agency | Resource category | Other Repository | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1058 | PeptideMine | A webserver for the design of peptides for protein:peptide binding studies derived from protein:protein interactomes | http://caps.ncbs.res.in/peptidemine/ | BMC Bioinformatics | BioDrug | Protein | 2010 | 20858292 | Balasubramanian Gopal Ramanathan Sowdhamini | bgopal@mbu.iisc.ernet.in mini@ncbs.res.in | National Center for Biological Sciences (NCBS) | Bangalore | Karnataka | NCBS | Functional | Prediction | NA |
| 1419 | ECMIS | computational approach for the identification of hotspots at protein:protein interfaces | http://caps.ncbs.res.in/download/ECMIS/ECMIS.zip | BMC Bioinformatics | Protein Function | Protein | 2016 | 25228146 | Ramanathan Sowdhamini | mini@ncbs.res.in | National Center for Biological Sciences (NCBS) | Bangalore | Karnataka | NCBS | Functional | Prediction | NA |
| 1420 | PIMADb | Database of Protein-Protein Interactions in Huge Macromolecular Assemblies | http://caps.ncbs.res.in/pimadb | Bioinformatics and biology insights | Interactome | Protein | 2016 | 27478368 | Ramanathan Sowdhamini | mini@ncbs.res.in | National Center for Biological Sciences (NCBS) | Bangalore | Karnataka | NCBS | Functional | Database | NA |
| 1421 | RStrucFam | To predict the structure, type of cognate RNA(s) and function(s) of proteins, where possible, from mere sequence information | http://caps.ncbs.res.in/rstrucfam | BMC Bioinformatics | Protein Function | RNA | 2016 | 27717309 | Ramanathan Sowdhamini | mini@ncbs.res.in | National Center for Biological Sciences (NCBS) | Bangalore | Karnataka | NCBS | Functional | Database | NA |
| 1422 | DOCKSCORE | A webserver for ranking protein-protein docked poses | http://caps.ncbs.res.in/dockscore/ | BMC Bioinformatics | Protein Structure Protein Function | Protein | 2015 | 25902779 | Ramanathan Sowdhamini | mini@ncbs.res | National Center for Biological Sciences (NCBS) | Bangalore | Karnataka | NCBS | Functional | Prediction | NA |
| 1423 | LenVarDB | Database of length-variant protein domains | http://caps.ncbs.res.in/lenvardb | Nucleic Acids Research | Protein Structure | Protein | 2014 | 24194591 | Ramanathan Sowdhamini | mini@ncbs.res.in | National Center for Biological Sciences (NCBS) | Bangalore | Karnataka | NCBS | Functional | Database | NA |
| 1424 | 3PFDB | Search protocol and update for the identification of representatives of protein sequence domain families | http://caps.ncbs.res.in/3pfdbplus/ | Database: The Journal of Biological Databases and Curation | Protein Structure | Protein | 2014 | 24700812 | Ramanathan Sowdhamini | mini@ncbs.res.in | National Center for Biological Sciences (NCBS) | Bangalore | Karnataka | NCBS | Functional | Database | NA |
| 1425 | DOR | A database of Olfactory Receptors - Integrated Repository for Sequence and Secondary Structural Information of Olfactory Receptors in Selected Eukaryotic Genomes | http://caps.ncbs.res.in/DOR | Bioinformatics and biology insights | Genomics | Other | 2014 | 25002814 | Ramanathan Sowdhamini | mini@ncbs.res.in | National Center for Biological Sciences (NCBS) | Bangalore | Karnataka | NCBS | Functional | Database | NA |
| 1426 | POEAS | Automated Plant Phenomic Analysis Using Plant Ontology | http://caps.ncbs.res.in/poeas/ | Bioinformatics and biology insights | Genomics | Other | 2014 | 25574136 | Ramanathan Sowdhamini | mini@ncbs.res.in | National Center for Biological Sciences (NCBS) | Bangalore | Karnataka | NCBS | Functional | Prediction | NA |
| 1427 | STIFDB2 | An updated version of plant stress-responsive transcription factor database with additional stress signals, stress-responsive transcription factor binding sites and stress-responsive genes in Arabidopsis and rice | http://caps.ncbs.res.in/stifdb2 | Plant and cell physiology | Genomics | DNA | 2013 | 23314754 | Ramanathan Sowdhamini | mini@ncbs.res.in | National Center for Biological Sciences (NCBS) | Bangalore | Karnataka | NCBS | Functional | Database | NA |
| 1428 | PASS2 | An update to the database of structure-based sequence alignments of structural domain superfamilies | http://caps.ncbs.res.in/pass2/ | Nucleic Acids Research | Protein Structure | DNA | 2012 | 22123743 | Ramanathan Sowdhamini | mini@ncbs.res.in | National Center for Biological Sciences (NCBS) | Bangalore | Karnataka | NCBS | Functional | Database | bio.tools, Bioinformatics Software and Tools |
| 1429 | COILCHECK+ | Structural attributes for the recognition of weak and anomalous regions in coiled:coils of myosins and other motor proteins | http://caps.ncbs.res.in/coilcheckplus/ | BMC Research Notes | Protein Structure Protein Function | Protein | 2012 | 23009691 | Ramanathan Sowdhamini | mini@ncbs.res.in | National Center for Biological Sciences (NCBS) | Bangalore | Karnataka | NCBS | Functional | Prediction | NA |
| 1430 | Myosinome | A database of myosins from select eukaryotic genomes to facilitate analysis of sequence-structure-function relationships | http://caps.ncbs.res.in/myosinome | Bioinformatics and biology insights | Protein Structure Protein Function Genomics | DNA | 2012 | 23189029 | Ramanathan Sowdhamini | mini@ncbs.res.in | National Center for Biological Sciences (NCBS) | Bangalore | Karnataka | NCBS | Functional | Database | NA |
| 1431 | 3dswap-pred | Prediction of 3D domain swapping from protein sequence using Random Forest approach. | http://caps.ncbs.res.in/3dswap-pred/ | Protein and peptide letters | Protein Structure | Protein | 2011 | 21592079 | Ramanathan Sowdhamini | mini@ncbs.res.in | National Center for Biological Sciences (NCBS) | Bangalore | Karnataka | NCBS | Functional | Prediction | NA |
| 1432 | HORI | A web server to compute Higher Order Residue Interactions in protein structures | http://caps.ncbs.res.in/hori/ | BMC Bioinformatics | Protein Structure | Protein | 2010 | 20122196 | Ramanathan Sowdhamini | mini@ncbs.res.in | National Center for Biological Sciences (NCBS) | Bangalore | Karnataka | NCBS | Functional | Prediction | NA |
| 1433 | 3PFDB | A database of best representative PSSM profiles (BRPs) of protein families generated using a novel data mining approach | http://caps.ncbs.res.in/3pfdb | Biodata Mining | Protein Function | Protein | 2009 | 19961575 | Ramanathan Sowdhamini | mini@ncbs.res.in | National Center for Biological Sciences (NCBS) | Bangalore | Karnataka | NCBS | Functional | Database | NA |
| 1434 | COILCHECK | an interactive server for the analysis of interface regions in coiled coils | http://caps.ncbs.res.in/coilcheck/ | Protein and peptide letters | Protein Function | Other | 2008 | 18221010 | Ramanathan Sowdhamini | mini@ncbs.res.in | National Center for Biological Sciences (NCBS) | Bangalore | Karnataka | NCBS | Functional | Prediction | NA |
| 1435 | STIF | Identification of stress-upregulated transcription factor binding sites in Arabidopsis thaliana | http://caps.ncbs.res.in/download/stif | Bioinformation | Genomics | Other | 2008 | 18841238 | Ramanathan Sowdhamini | mini@ncbs.res.in | National Center for Biological Sciences (NCBS) | Bangalore | Karnataka | NCBS | Functional | Prediction | NA |
| 1436 | IWS | integrated web server for protein sequence and structure analysis | http://caps.ncbs.res.in/iws | Bioinformation | Protein Function | Protein | 2007 | 18288329 | Ramanathan Sowdhamini | mini@ncbs.res.in | National Center for Biological Sciences (NCBS) | Bangalore | Karnataka | NCBS | Functional | Prediction | NA |
| 1437 | HARMONY | A server for the assessment of protein structures | http://caps.ncbs.res.in/harmony/ | Nucleic Acids Research | Protein Structure | Protein | 2006 | 16844999 | Ramanathan Sowdhamini | mini@ncbs.res.in | National Center for Biological Sciences (NCBS) | Bangalore | Karnataka | NCBS | Functional | Prediction | bio.tools |
| 1438 | DIAL | A webbased server for the automatic identification of structural domains in proteins | http://caps.ncbs.res.in/DIAL/home.html | Nucleic Acids Research | Protein Structure | Protein | 2005 | 15980441 | Ramanathan Sowdhamini | mini@ncbs.res.in | National Center for Biological Sciences (NCBS) | Bangalore | Karnataka | NCBS | Functional | Prediction | NA |
| 1439 | DSDBASE | A consortium of native and modelled disulphide bonds in proteins | http://www.ncbs.res.in/ | Nucleic Acids Research | Protein Structure | Protein | 2004 | 14681394 | Ramanathan Sowdhamini | mini@ncbs.res.in | National Center for Biological Sciences (NCBS) | Bangalore | Karnataka | NCBS | Functional | Database | Bioinformatics Software and Tools |
| 1440 | FMALIGN | Improvement of alignment accuracy utilizing sequentially conserved motifs | http://caps.ncbs.res.in/FMALIGN/Home.html | BMC Bioinformatics | Genomics | Other | 2004 | 15509307 | Ramanathan Sowdhamini | mini@ncbs.res.in | National Center for Biological Sciences (NCBS) | Bangalore | Karnataka | NCBS | Functional | Prediction | NA |
| 1441 | PPCheck | A webserver for identification of non-covalent interactions at the interface of a protein-protein complex | http://caps.ncbs.res.in/ppcheck/ | Bioinformatics and biology insights | Protein Function | Protein | 2015 | 26448684 | Ramanathan Sowdhamini | mini@ncbs.res.in | National Center for Biological Sciences (NCBS) | Bangalore | Karnataka | NCBS | Functional | Prediction | bio.tools |
| 1442 | EcRBPome | A Comprehensive Database of All Known E. Coli RNA-binding Proteins | http://caps.ncbs.res.in/ecrbpome/ | BMC Bioinformatics | Protein Function | RNA | 2019 | 31117939 | Ramanathan Sowdhamini | mini@ncbs.res.in | National Center for Biological Sciences (NCBS) | Bangalore | Karnataka | NCBS | Functional | Database | bio.tools |
| 1443 | GenDiS | Database Update With Improved Approach and Features to Recognize Homologous Sequences of Protein Domain Superfamilies | http://caps.ncbs.res.in/cgi-bin/gendis+/index.py | Database: The Journal of Biological Databases and Curation | Protein Structure | Protein | 2019 | 30943284 | Ramanathan Sowdhamini | mini@ncbs.res.in | National Center for Biological Sciences (NCBS) | Bangalore | Karnataka | NCBS | Functional | Database | NA |
| 1493 | DOQCS | Developing complex signaling models using GENESIS/Kinetikit | http://doqcs.ncbs.res.in | Science STKA | Interactome | Other | 2004 | 14872097 | Sharat Jacob Vayttaden Upinder Singh Bhalla | sharat@ncbs.res.in bhalla@ncbs.res.in | National Center for Biological Sciences (NCBS) | Bangalore | Karnataka | NCBS | Functional | Database | NA |