The total number entries retrieved from this search are 57

ID	Resource Name	Resource Description	Resource Link	Journal	Class	Source	Year of Publication	PMID	Corresponding Author	Email	Institute	City	State	Functional Status	Funding Agency	Resource category	Other Repository
1014	PPDB	A tool for investigation of plants physiology based on gene ontology	http://www.iitr.ernet.in/ajayshiv/	Interdisciplinary Sciences: Computational Life Sciences	Protein Function	DNA	2015	25183354	Ajay Shiv Sharma	2ajayshiv@gmail.com	Indian Institute of Technology (IIT R)	Roorkee	Uttarakhand	IIT	Functional	Database	NA
1028	SMMDB	Database for small molecule modulators and their targets involved in neurological diseases	http://bsbe.iiti.ac.in/bsbe/smmdb	Database: The Journal of Biological Databases and Curation	Cheminformatics	Other	2018	30219840	Amit Kumar	amitk@iiti.ac.in	Indian Institute of Technology (IIT I)	Indore	Madhya Pradesh	IIT	Functional	Database	NA
1029	NALDB	Nucleic acid ligand database for small molecules targeting nucleic acid	http://bsbe.iiti.ac.in/bsbe/naldb/HOME.php	Database: The Journal of Biological Databases and Curation	Cheminformatics	DNA	2016	26896846	Amit Kumar	amitk@iiti.ac.in	Indian Institute of Technology (IIT I)	Indore	Madhya Pradesh	IIT	Functional	Database	NA
1030	G4IPDB	Database that contains detailed information about proteins interacting with nucleic acids that forms G-quadruplex structures	http://bsbe.iiti.ac.in/bsbe/ipdb/index.php	Scientific Reports	Interactome	Protein	2016	27905517	Amit Kumar	amitk@iiti.ac.in	Indian Institute of Technology (IIT I)	Indore	Madhya Pradesh	IIT	Functional	Database	NA
1043	pStab	prediction of stable mutants, unfolding curves, stability maps and protein electrostatic frustration	http://pbl.biotech.iitm.ac.in/pStab	Bioinformatics	Protein Function	Protein	2018	29092002	Athi N Naganathan	athi@iitm.ac.in	Indian Institute of Technology (IIT M)	Chennai	Tamil Nadu	IIT	Functional	Prediction	NA
1044	pPerturb	A method for predicting long distance energy couplings and mutation-induced stability changes in proteins via perturbations	http://pbl.biotech.iitm.ac.in/pPerturb	ACS Omega	Protein Function	Protein	2020	31984271	Athi N Naganathan	athi@iitm.ac.in	Indian Institute of Technology (IIT M)	Chennai	Tamil Nadu	IIT	Functional	Prediction	NA
1045	PvaxDB	Helpful in identifying novel protein drug targets, expediting development of new drugs to combat malaria	http://www.scfbio-iitd.res.in/PvaxDB/	Database: The Journal of Biological Databases and Curation	Cheminformatics	Protein	2018	29688373	B Jayaram	bjayaram@chemistry.iitd.ac.in	Indian Institute of Technology (IIT D)	New Delhi	New Delhi	IIT	Functional	Database	NA
1046	Intercalate	A DNA intercalation methodology for an efficient prediction of ligand binding pose and energetics	http://www.scfbio-iitd.res.in/intercalate/	Bioinformatics	Protein Function Cheminformatics	DNA	2017	28073762	B Jayaram	bjayaram@chemistry.iitd.ac.in	Indian Institute of Technology (IIT D)	New Delhi	New Delhi	IIT	Functional	Prediction	NA
1047	ProTSAV	A protein tertiary structure analysis and validation server	http://www.scfbio-iitd.res.in/software/proteomics/protsav.jsp	Bioichimica et biophysics acta	Protein Structure	Protein	2016	26478257	B Jayaram	bjayaram@chemistry.iitd.ac.in	Indian Institute of Technology (IIT D)	New Delhi	New Delhi	IIT	Functional	Prediction	BTISNet
1048	RM2TS	Web server to convert a tertiary structure to an alphanumeric string and to predict the tertiary structure from the sequence of a protein	http://www.scfbio-iitd.res.in/software/proteomics/rm2ts.jsp	The journal of physical chemsitry	Protein Structure	Protein	2015	26098815	B Jayaram	bjayaram@chemistry.iitd.ac.in	Indian Institute of Technology (IIT D)	New Delhi	New Delhi	IIT	Functional	Prediction	BTISNet
1049	D2N	New avenue towards assigning reliable structures to whole proteomes even in the absence of experimentally determined native structures	http://www.scfbio-iitd.res.in/software/d2n.jsp	Bioichimica et biophysics acta	Protein Structure	Protein	2014	25062912	B Jayaram	bjayaram@chemistry.iitd.ac.in	Indian Institute of Technology (IIT D)	New Delhi	New Delhi	IIT	Functional	Prediction	NA
1050	pcSM	Capturing native/native like structures with a physico-chemical metric (pcSM) in protein folding	http://www.scfbio-iitd.res.in/software/pcsm.jsp	Bioichimica et biophysics acta	Protein Structure Protein Function	Protein	2013	23665455	B Jayaram	bjayaram@chemistry.iitd.ac.in	Indian Institute of Technology (IIT D)	New Delhi	New Delhi	IIT	Functional	Prediction	NA
1051	ALGORITHM	A homology/ab initio hybrid algorithm for sampling near-native protein conformations	http://www.scfbio-iitd.res.in/software/Bhageerath-HStrgen1.jsp	Journal of Computational Chemistry	Protein Structure	Protein	2013	23728619	B Jayaram	bjayaram@chemistry.iitd.ac.in	Indian Institute of Technology (IIT D)	New Delhi	New Delhi	IIT	Functional	Prediction	NA
1052	Sanjeevini	A freely accessible webserver for target directed lead molecule discovery	http://www.scfbio-iitd.res.in/sanjeevini/sanjeevini.jsp	BMC Bioinformatics	Cheminformatics	Other	2012	23282245	B Jayaram	bjayaram@chemistry.iitd.ac.in	Indian Institute of Technology (IIT D)	New Delhi	New Delhi	IIT	Functional	Prediction	NA
1053	TPACM4	A fast empirical GAFF compatible partial atomic charge assignment scheme for modeling interactions of small molecules with biomolecular targets	http://www.scfbio-iitd.res.in/software/drugdesign/charge.jsp	Journal of Computational Chemistry	Genomics	Other	2011	21341292	B Jayaram	bjayaram@chemistry.iitd.ac.in	Indian Institute of Technology (IIT D)	New Delhi	New Delhi	IIT	Functional	Prediction	NA
1054	AADS	An automated active site identification, docking, and scoring protocol for protein targets based on physicochemical descriptors	http://www.scfbio-iitd.res.in/dock/ActiveSite_new.jsp	Journal of chemical information and modeling	Protein Structure Protein Function Cheminformatics	Protein	2011	21877713	B Jayaram	bjayaram@chemistry.iitd.ac.in	Indian Institute of Technology (IIT D)	New Delhi	New Delhi	IIT	Functional	Prediction	NA
1055	ProRegln	A regularity index for the selection of native-like tertiary structures of proteins	www.scfbio-iitd.res.in/software/proregin.jsp	Journal of biosciences	Protein Structure	Protein	2007	17426381	B Jayaram	bjayaram@chemistry.iitd.ac.in	Indian Institute of Technology (IIT D)	New Delhi	New Delhi	IIT	Functional	Prediction	NA
1056	Bhageerath	An energy based web enabled computer software suite for limiting the search space of tertiary structures of small globular proteins	http://www.scfbio-iitd.res.in/bhageerath/index.jsp	Nucleic Acids Research	Protein Structure	Protein	2006	17090600	B Jayaram	bjayaram@chemistry.iitd.ac.in	Indian Institute of Technology (IIT D)	New Delhi	New Delhi	IIT	Functional	Prediction	BTISNet
1057	SEProm	A method for predicting prokaryotic promoter based on DNA structure and energetics	http://www.scfbio-iitd.res.in/PvaxDB/	Bioinformatics	Genomics	Other	2020	31909789	B Jayaram	bjayaram@chemistry.iitd.ac.in	Indian Institute of Technology (IIT D)	New Delhi	New Delhi	IIT	Functional	Prediction	NA
1059	ImmtorLig_DB	Repertoire of virtually screened small molecules against immune receptors to bolster host immunity	http://bioinfo.imtech.res.in/bvs/immtor/	Scientific Reports	Cheminformatics Vaccinomics	Other	2019	30816123	Balvinder Singh Javed N Agrewala	bvs@imtech.res.in jagrewala@iitrpr.ac.in	CSIR - Institute of Microbial Technology (CSIR-IMTECH) Indian Institute of Technology Ropar (IIT RPR)	Chandigarh	Chandigarh	CSIR	Functional	Database	NA
1105	CRISPcut	Tool for designing optimal sgRNAs for CRISPR/Cas9 based experiments in human cells	http://web.iitd.ac.in/crispcut	Genomics	Genomics	RNA	2018	29605634	Durai Sundar	sundar@dbeb.iitd.ac.in	Indian Institute of Technology (IIT D)	New Delhi	New Delhi	IIT	Functional	Prediction	NA
1106	Zif-Predict IHBE	Exploiting the recognition code for elucidating the mechanism of zinc finger protein-DNA interactions	http://web.iitd.ac.in/~sundar/zifpredict_ihbe	BMC Bioinformatics	Interactome	DNA	2016	28155654	Durai Sundar	sundar@dbeb.iitd.ac.in	Indian Institute of Technology (IIT D)	New Delhi	New Delhi	IIT	Functional	Prediction	NA
1107	ZifNN	An ensemble micro neural network approach for elucidating interactions between zinc finger proteins and their target DNA	http://web.iitd.ac.in/~sundar/ZifNN/	BMC Bioinformatics	Interactome	DNA	2016	28155662	Durai Sundar	sundar@dbeb.iitd.ac.in	Indian Institute of Technology (IIT D)	New Delhi	New Delhi	IIT	Functional	Prediction	NA
1108	ZiF-Predict	A web tool for predicting DNA-binding specificity in C2H2 zinc finger proteins	http://web.iitd.ac.in/~sundar/zifpredict/	Genomics, Proteomics & Bioinformatics	Interactome	DNA	2010	20691397	Durai Sundar	sundar@dbeb.iitd.ac.in	Indian Institute of Technology (IIT D)	New Delhi	New Delhi	IIT	Functional	Prediction	NA
1109	ZifBASE	A database of zinc finger proteins and associated resources	http://web.iitd.ac.in/~sundar/zifbase	BMC Genomics	Protein Structure	Protein	2009	19737425	Durai Sundar	sundar@dbeb.iitd.ac.in	Indian Institute of Technology (IIT D)	New Delhi	New Delhi	IIT	Functional	Database	NA
1290	NeuroDNet	An open source platform for constructing and analyzing neurodegenerative disease networks	http://bioschool.iitd.ac.in/NeuroDNet/	BMC neuroscience	Interactome	Other	2013	23286825	James Gomes	jgomes@bioschool.iitd.ac.in	Indian Institute of Technology (IIT D)	New Delhi	New Delhi	IIT	Functional	Database	NA
1291	ANGDelMut	A web-based tool for predicting and analyzing functional loss mechanisms of amyotrophic lateral sclerosis:associated angiogenin mutations	http://bioschool.iitd.ernet.in/DelMut/	F1000 research	Genomics Vaccinomics	Other	2013	24555108	James Gomes	jgomes@bioschool.iitd.ac.in	Indian Institute of Technology (IIT D)	New Delhi	New Delhi	IIT	Functional	Prediction	NA
1319	BoMiProt	Database of bovine milk proteins	http://bomiprot.org	Journal of Proteomics	Protein Function	Protein	2020	31958638	Kiran Ambatipudi	kiranfbt@iitr.ac.in	Indian Institute of Technology (IIT R)	Roorkee	Uttarakhand	IIT	Functional	Database	NA
1363	MutHTP	Contains information on 183 395 disease-associated and 17 827 neutral mutations in human transmembrane proteins	http://www.iitm.ac.in/bioinfo/MutHTP/	Bioinformatics	Protein Structure	Protein	2018	29401218	Michael Gromiha	gromiha@iitm.ac.in	Indian Institute of Technology (IIT M)	Chennai	Tamil Nadu	IIT	Functional	Database	NA
1364	APPLE	Importance of functional groups in predicting the activity of small molecule inhibitors for Bcl-2 and Bcl-xL	http://www.iitm.ac.in/bioinfo/APPLE/	Chemical biology and drug design	Cheminformatics	Protein	2017	28112863	Michael Gromiha	gromiha@iitm.ac.in	Indian Institute of Technology (IIT M)	Chennai	Tamil Nadu	IIT	Functional	Prediction	NA
1365	PROXiMATE	Database of thermodynamic data for more than 6000 missense mutations in 174 heterodimeric protein-protein complexes, supplemented with interaction network data from STRING database, solvent accessibility, sequence, structural and functional information, experimental conditions and literature information	http://www.iitm.ac.in/bioinfo/PROXiMATE/	Bioinformatics	Protein Structure	Protein	2017	28498885	Michael Gromiha	gromiha@iitm.ac.in	Indian Institute of Technology (IIT M)	Chennai	Tamil Nadu	IIT	Functional	Database	NA
1366	CPAD	A Repository of Manually Curated Experimental Data on Protein and Peptide Aggregation	http://www.iitm.ac.in/bioinfo/CPAD/	PLOS One	BioDrug	Protein	2016	27043825	Michael Gromiha	gromiha@iitm.ac.in	Indian Institute of Technology (IIT M)	Chennai	Tamil Nadu	IIT	Functional	Prediction	NA
1367	ProTherm	Applications of Protein Thermodynamic Database for Understanding Protein Mutant Stability and Designing Stable Mutants	http://www.abren.net/protherm/	Methods in Molecular Biology	Protein Structure	Protein	2016	27115628	Michael Gromiha	gromiha@iitm.ac.in	Indian Institute of Technology (IIT M)	Chennai	Tamil Nadu	IIT	Functional	Database	Bioinformatics Software and Tools
1368	PDBparam	Online Resource for Computing Structural Parameters of Proteins	http://www.iitm.ac.in/bioinfo/pdbparam/	Bioinformatics and biology insights	Protein Structure	Protein	2016	27330281	Michael Gromiha	gromiha@iitm.ac.in	Indian Institute of Technology (IIT M)	Chennai	Tamil Nadu	IIT	Functional	Database	NA
1369	Folding RaCe	Method for predicting changes in protein folding rates upon point mutations	http://www.iitm.ac.in/bioinfo/proteinfolding/foldingrace.html	Bioinformatics	Protein Structure	Protein	2015	25686635	Michael Gromiha	gromiha@iitm.ac.in	Indian Institute of Technology (IIT M)	Chennai	Tamil Nadu	IIT	Functional	Prediction	NA
1370	DIM-Pred	Prediction of protein disorder on amino acid substitutions	http://www.iitm.ac.in/bioinfo/DIM_Pred/	Analytical biochemistry	Protein Structure	Protein	2015	26348538	Michael Gromiha	gromiha@iitm.ac.in	Indian Institute of Technology (IIT M)	Chennai	Tamil Nadu	IIT	Functional	Prediction	NA
1371	GAP	Towards almost 100 percent prediction for β-strand-mediated aggregating peptides with distinct morphologies	http://www.iitm.ac.in/bioinfo/GAP/	Bioinformatics	BioDrug	Protein	2014	24681906	Michael Gromiha	gromiha@iitm.ac.in	Indian Institute of Technology (IIT M)	Chennai	Tamil Nadu	IIT	Functional	Prediction	bio.tools
1372	ProCaff	Repository of protein-carbohydrate binding affinity	http://www.iitm.ac.in/bioinfo/procaff/	Bioinformatics	Protein Structure	Protein	2020	32119071	Michael Gromiha	gromiha@iitm.ac.in	Indian Institute of Technology (IIT M)	Chennai	Tamil Nadu	IIT	Functional	Database	NA
1373	AggreRATE-Pred	Prediction method for change in aggregation rate point upon mutation	http://www.iitm.ac.in/bioinfo/aggrerate-pred/	Bioinformatics	Genomics	Other	2020	31599925	Michael Gromiha	gromiha@iitm.ac.in	Indian Institute of Technology (IIT M)	Chennai	Tamil Nadu	IIT	Functional	Prediction	bio.tools
1374	Pred-MutHTP	A method for predicting disease causing and neutral mutations in human transmembrane proteins	https://www.iitm.ac.in/bioinfo/PredMutHTP/.	Human Mutation	Genomics Protein Function	Protein	2020	31821684	Michael Gromiha	gromiha@iitm.ac.in	Indian Institute of Technology (IIT M)	Chennai	Tamil Nadu	IIT	Functional	Prediction	NA
1375	PPA-Pred	Protein–protein binding affinity prediction from amino acid sequence	https://www.iitm.ac.in/bioinfo/PPA_Pred/	Bioinformatics	Interactome	Protein	2014	25172924	Michael Gromiha	gromiha@iitm.ac.in	Indian Institute of Technology (IIT M)	Chennai	Tamil Nadu	IIT	Functional	Prediction	bio.tools
1376	Seq2Feature	A Comprehensive Web-Based Feature Extraction Tool	https://www.iitm.ac.in/bioinfo/SBFE/index.html	Bioinformatics	Protein Function	Other	2019	31135038	Michael Gromiha	gromiha@iitm.ac.in	Indian Institute of Technology (IIT M)	Chennai	Tamil Nadu	IIT	Functional	Prediction	bio.tools
1377	Protein-RNA	Prediction of RNA Binding Residues: An Extensive Analysis Based on Structure and Function to Select the Best Predictor	https://www.iitm.ac.in/bioinfo/RNA-protein/	PLOS One	Protein Function	Protein	2014	24658593	Michael Gromiha	gromiha@iitm.ac.in	Indian Institute of Technology (IIT M)	Chennai	Tamil Nadu	IIT	Functional	Prediction	NA
1378	HuVarBase	A Human Variant Database With Comprehensive Information at Gene and Protein Levels	https://www.iitm.ac.in/bioinfo/huvarbase/	PLOS One	Genomics	DNA	2019	30703169	Michael Gromiha	gromiha@iitm.ac.in	Indian Institute of Technology (IIT M)	Chennai	Tamil Nadu	IIT	Functional	Prediction	NA
1395	Onco-Regulon	An integrated database of regulatory motifs of cancer genes clubbed with Unique Sequence-Predictor (USP) a software suite that identifies unique sequences for each of these regulatory DNA motifs at the specified position in the genome	http://www.scfbio-iitd.res.in/software/onco/NavSite/index.htm	Database: The Journal of Biological Databases and Curation	Genomics	DNA	2016	27515825	Nirotpal Mrinal B Jayaram	nmrinal@gmail.com bjayaram@chemistry.iitd.ac.in	Indian Institute of Technology (IIT D)	New Delhi	New Delhi	IIT	Functional	Database	NA
1396	miRway	Collects an exhaustive list of miRNA-pathway association entries for 76 critical disease conditions by reviewing 663 published articles	http://www.mirway.iitkgp.ac.in/	Database: The Journal of Biological Databases and Curation	Genomics	RNA	2018	29688364	Nishant Chakravorty	nishant@smst.iitkgp.ernet.in	Indian Institute of Technology (IIT KGP)	Kharagpur	West Bengal	IIT	Functional	Database	NA
1444	dbSweet	Design mutational experiments and simulation studies that will aid to advance our understanding of the physiological role of SWEET homologs	http://bioinfo.iitk.ac.in/bioinfo/dbsweet/Home	Journal of molecular biology	Protein Function	Other	2018	29665371	Ramasubbu Sankararamakrishnan	sankar@iitk.ac.in	Indian Institute of Technology (IIT K)	Kanpur	Uttar Pradesh	IIT	Functional	Database	NA
1445	MIPModDB	A central resource for the superfamily of major intrinsic proteins	http://bioinfo.iitk.ac.in/MIPModDB	Nucleic Acids Research	Protein Structure	Protein	2012	22080560	Ramasubbu Sankararamakrishnan	rsankar@iitk.ac.in	Indian Institute of Technology (IIT R)	Roorkee	Uttarakhand	IIT	Functional	Database	NA
1446	TIS Prediction	Prediction of translation initiation sites in human mRNA sequences with AUG start codon in weak Kozak context	http://bioinfo.iitk.ac.in/AUGPred/	Biochemical and biophysical research communications	Genomics	RNA	2008	18342624	Ramasubbu Sankararamakrishnan	rsankar@iitk.ac.in	Indian Institute of Technology (IIT K)	Kanpur	Uttar Pradesh	IIT	Functional	Prediction	NA
1447	PRDBv2	A non-redundant protein-RNA docking benchmark version 2.0	http://www.csb.iitkgp.ac.in/applications/PRDBv2	Proteins	Protein Function	RNA	2017	27862282	Ranjit Prasad Bahadur	r.bahadur@hijli.iitkgp.ernet.in	Indian Institute of Technology (IIT KGP)	Kharagpur	West Bengal	IIT	Functional	Prediction	NA