Browse result page of IndioBioDb
The total number entries retrieved from this search are 44
| ID | Resource Name | Resource Description | Resource Link | Journal | Class | Source | Year of Publication | PMID | Corresponding Author | Institute | City | State | Functional Status | Funding Agency | Resource category | Other Repository | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1074 | DockYard | A repository to assist modeling of protein:protein docking | http://pallab.serc.iisc.ernet.in/dockYard/ | Journal of Molecular Modeling | Protein Structure Cheminformatics | Protein | 2011 | 20524020 | Debnath Pal | dpal@serc.iisc.ernet.in | Indian Institute of Science (IISc) | Bangalore | Karnataka | IISc | Functional | Prediction | NA |
| 1075 | NIP-NSc | New measures for estimating surface complementarity and packing at protein:protein interfaces | http://pallab.serc.iisc.ernet.in/nip_nsc/ | FEBS letters | Protein Structure Interactome | Protein | 2010 | 20153323 | Debnath Pal | dpal@serc.iisc.ernet.in | Indian Institute of Science (IISc) | Bangalore | Karnataka | IISc | Functional | Prediction | bio.tools |
| 1303 | Glaucoma Pred | Glaucoma prediction based on Myocilin genotype and phenotype information | http://bioserver1.physics.iisc.ac.in/myocilin | Genomics | Genomics | Other | 2018 | 29665417 | K Sekar | sekar@iisc.ac.in | Indian Institute of Science (IISc) | Bangalore | Karnataka | IISc | Functional | Prediction | NA |
| 1304 | Ramachandran plot | Ramachandran plot on the web | http://dicsoft1.physics.iisc.ernet.in/rp/ | Protein and peptide letters | Protein Function | Other | 2007 | 17897092 | K Sekar | sekar@iisc.ac.in | Indian Institute of Science (IISc) | Bangalore | Karnataka | IISc | Functional | Prediction | BTISNet |
| 1305 | SSEP-2.0 | Secondary Structural Elements of Proteins | http://cluster.physics.iisc.ernet.in/ssep | Acta crystallographica.section D biological crystallography | Protein Structure | Protein | 2005 | 15858275 | K Sekar | sekar@physics.iisc.ernet.in | Indian Institute of Science (IISc) | Bangalore | Karnataka | IISc | Functional | Database | NA |
| 1306 | CADB-3.0 | Conformation Angles Database | http://cluster.physics.iisc.ernet.in/cadb/ | Acta crystallographica.section D biological crystallography | Protein Structure | Other | 2005 | 15858276 | K Sekar | sekar@physics.iisc.ernet.in | Indian Institute of Science (IISc) | Bangalore | Karnataka | IISc | Functional | Database | NA |
| 1307 | SEM | A web based GUI to generate and visualize the macromolecules | http://dicsoft2.physics.iisc.ernet.in/sem/ | Nucleic Acids Research | Genomics | Other | 2003 | 12824326 | K Sekar | sekar@physics.iisc.ernet.in | Indian Institute of Science (IISc) | Bangalore | Karnataka | IISc | Functional | Prediction | bio.tools, BTISNet |
| 1308 | PPS | A computing engine to find Palindromes in all Protein sequences | http://pranag.physics.iisc.ernet.in/pps/ | Bioinformation | Protein Function | Protein | 2014 | 24516327 | K Sekar | sekar@physics.iisc.ernet.in | Indian Institute of Science (IISc) | Bangalore | Karnataka | IISc | Functional | Prediction | bio.tools |
| 1309 | SMS 2.0 | an updated database to study the structural plasticity of short peptide fragments in non-redundant proteins | http://cluster.physics.iisc.ernet.in/sms/ | Genomics, Proteomics & Bioinformatics | Protein Structure | Protein | 2012 | 22449400 | K Sekar | sekar@physics.iisc.ernet.in | Indian Institute of Science (IISc) | Bangalore | Karnataka | IISc | Functional | Database | NA |
| 1310 | Junker | An intergenic explorer for bacterial genomes | http://pranag.physics.iisc.ernet.in/junker/ | Genomics, Proteomics & Bioinformatics | Genomics | DNA | 2011 | 22196361 | K Sekar | sekar@physics.iisc.ernet.in | Indian Institute of Science (IISc) | Bangalore | Karnataka | IISc | Functional | Database | NA |
| 1311 | FAIR | A server for internal sequence repeats | http://bioserver1.physics.iisc.ernet.in/fair/ | Bioinformation | Genomics | DNA | 2010 | 20978598 | K Sekar | sekar@physics.iisc.ernet.in | Indian Institute of Science (IISc) | Bangalore | Karnataka | IISc | Functional | Prediction | NA |
| 1312 | PSST-2.0 | Protein Data Bank Sequence Search Tool | http://pranag.physics.iisc.ernet.in/psst/ | Applied bioinformatics | Protein Structure | Protein | 2005 | 16128616 | K Sekar | sekar@physics.iisc.ernet.in | Indian Institute of Science (IISc) | Bangalore | Karnataka | IISc | Functional | Database | NA |
| 1313 | RepEx | A method for repeat extraction | http://bioserver2.physics.iisc.ac.in/RepEx/ | Computational Biology and Chemistry | Genomics | Other | 2019 | 30598392 | K Sekar | sekar@iisc.ac.in | Indian Institute of Science (IISc) | Bangalore | Karnataka | IISc | Functional | Prediction | bio.tools |
| 1314 | ACMS | A repository of Alternate Conformations in Main and Side Chains of Protein Structures | http://iris.physics.iisc.ac.in/acms/ | Journal of Applied Cyrstallography | Protein Structure | Protein | 2019 | NA | K Sekar | sekar@iisc.ac.in | Indian Institute of Science (IISc) | Bangalore | Karnataka | IISc | Functional | Database | NA |
| 1332 | Nipah | A method for preidicting and desigining therapeutics against Nipah virus | http://cospi.iiserpune.ac.in/Nipah/ | PLoS Neglected Tropical Diseases | Cheminformatics | Protein | 2019 | 31830030 | M S Madhusudhan | madhusudhan@iiserpune.ac.in | Indian Institute of Science Education and Research (IISERP) | Pune | Maharashtra | IISER | Functional | Prediction | NA |
| 1333 | PIZSA | An Empirical Scoring Scheme for Evaluation of Protein-Protein Interactions | http://cospi.iiserpune.ac.in/pizsa/ | Nucleic Acids Research | Protein Function | Protein | 2019 | 31114890 | M S Madhusudhan | madhusudhan@iiserpune.ac.in | Indian Institute of Science Education and Research (IISERP) | Pune | Maharashtra | IISER | Functional | Prediction | bio.tools |
| 1338 | PromBase | A web resource for various genomic features and predicted promoters in prokaryotic genomes | http://nucleix.mbu.iisc.ernet.in/prombase/ | BMC Research Notes | Genomics | DNA | 2011 | 21781326 | Manju Bansal | mb@mbu.iisc.ernet.in | Indian Institute of Science (IISc) | Bangalore | Karnataka | IISc | Functional | Prediction | NA |
| 1383 | KinG | A database of protein kinases in genomes | http://king.mbu.iisc.ernet.in/ | Nucleic Acids Research | Genomics Protein Structure | Protein | 2004 | 14681382 | N Srinivasan | ns@mbu.iisc.ernet.in | Indian Institute of Science (IISc) | Bangalore | Karnataka | IISc | Functional | Database | NA |
| 1384 | PALI | A database of Phylogeny and ALIgnment of homologous protein structures | http://pauling.mbu.iisc.ernet.in/ | Nucleic Acids Research | Protein Structure | Protein | 2001 | 11125050 | N Srinivasan | ns@mbu.iisc.ernet.in | Indian Institute of Science (IISc) | Bangalore | Karnataka | IISc | Functional | Database | NA |
| 1385 | NrichD | Sequence databases enriched with computationally designed protein-like sequences aid in remote homology detection | http://proline.biochem.iisc.ernet.in/NRICHD/ | Nucleic Acids Research | Protein Structure | Protein | 2015 | 25262355 | N Srinivasan | ns@mbu.iisc.ernet.in | Indian Institute of Science (IISc) | Bangalore | Karnataka | IISc | Functional | Database | NA |
| 1386 | CLAP | A webserver for automatic classification of proteins with special reference to multi:domain proteins | http://nslab.mbu.iisc.ernet.in/clap/ | BMC Bioinformatics | Protein Structure | Protein | 2014 | 25282152 | N Srinivasan | ns@mbu.iisc.ernet.in | Indian Institute of Science (IISc) | Bangalore | Karnataka | IISc | Functional | Prediction | bio.tools |
| 1387 | HLaffy | Estimating peptide affinities for Class-1 HLA molecules by learning position-specific pair potentials | http://proline.biochem.iisc.ernet.in/HLaffy | Bioinformatics | Protein Function | Protein | 2016 | 27153594 | Nagasuma Chandra | nchandra@biochem.iisc.ernet.in | Indian Institute of Science (IISc) | Bangalore | Karnataka | IISc | Functional | Prediction | NA |
| 1388 | PLIC | Protein-ligand interaction clusters | http://proline.biochem.iisc.ernet.in/PLIC | Database: The Journal of Biological Databases and Curation | Interactome | Protein | 2014 | 24763918 | Nagasuma Chandra | nchandra@biochem.iisc.ernet.in | Indian Institute of Science (IISc) | Bangalore | Karnataka | IISc | Functional | Database | NA |
| 1389 | ABS-Scan | In silico alanine scanning mutagenesis for binding site residues in protein:ligand complex | http://proline.biochem.iisc.ernet.in/abscan/ | F1000 research | Protein Function | Protein | 2014 | 25685322 | Nagasuma Chandra | nchandra@biochem.iisc.ernet.in | Indian Institute of Science (IISc) | Bangalore | Karnataka | IISc | Functional | Prediction | bio.tools |
| 1390 | PocketAlign | A novel algorithm for aligning binding sites in protein structures | http://proline.physics.iisc.ernet.in/pocketalign/ | Journal of chemical information and modeling | Protein Function | Protein | 2011 | 21662242 | Nagasuma Chandra | nchandra@biochem.iisc.ernet.in | Indian Institute of Science (IISc) | Bangalore | Karnataka | IISc | Functional | Prediction | NA |
| 1391 | PocketDepth | A new depth based algorithm for identification of ligand binding sites in proteins | http://proline.physics.iisc.ernet.in/pocketdepth | Journal of structural biology | Protein Function | Protein | 2008 | 17949996 | Nagasuma Chandra | nchandra@biochem.iisc.ernet.in | Indian Institute of Science (IISc) | Bangalore | Karnataka | IISc | Functional | Prediction | NA |
| 1392 | Lectindb | A plant lectin database | http://nscdb.bic.physics.iisc.ernet.in | Glycobiology | Protein Structure | Protein | 2006 | 16782824 | Nagasuma Chandra | nchandra@serc.iisc.ernet.in | Indian Institute of Science (IISc) | Bangalore | Karnataka | IISc | Functional | Database | NA |
| 1405 | HSPIR | A manually annotated heat shock protein information resource | http://pdslab.biochem.iisc.ernet.in/hspir/ | Bioinformatics | Protein Function | Protein | 2012 | 22923302 | Patrick D Silva | patrick@biochem.iisc.ernet.in | Indian Institute of Science (IISc) | Bangalore | Karnataka | IISc | Functional | Database | NA |
| 1458 | THGS | A web-based database of Transmembrane Helices in Genome Sequences | http:// pranag.physics.iisc.ernet.in/thgs/ | Nucleic Acids Research | Genomics | Other | 2004 | 14681375 | S A Fernando | sekar@physics.iisc.ernet.in | Indian Institute of Science (IISc) | Bangalore | Karnataka | IISc | Functional | Database | Bioinformatics Software and Tools, BTISNet |
| 1479 | GraProStar | Ranking the quality of protein structure models using sidechain based network properties | http://vishgraph.mbu.iisc.ernet.in/GraProStr/native_non_native_ranking.html | F1000 research | Protein Structure | Protein | 2014 | 25580218 | Saraswathi Vishveshwara | sv@mbu.iisc.ernet.in | Indian Institute of Science (IISc) | Bangalore | Karnataka | IISc | Functional | Prediction | NA |
| 1514 | Riboscan | An efficient pHMM-based web-server to detect riboswitches in genomic sequences | http://service.iiserkol.ac.in/~riboscan/ | Bioinformatics | Genomics | RNA | 2002 | 26519506 | Sumit Mukherjee | mukherjee.sumit89@gmail.com | Indian Institute of Science Education and Research (IISERK) | Kolkata | Madhya Pradesh | IISER | Functional | Prediction | NA |
| 1515 | RiboD | Comprehensive database for prokaryotic riboswitches | http://ribod.iiserkol.ac.in/ | Bioinformatics | Genomics | RNA | 2019 | 30726866 | Sumit Mukherjee Supratim Sengupta | mukherjee.sumit89@gmail.com supratim.sen@iiserkol.ac.in | Indian Institute of Science Education and Research (IISERK) | Kolkata | Madhya Pradesh | IISER | Functional | Database | bio.tools |
| 1544 | WebGesSTer DB | A transcription terminator database | http://pallab.serc.iisc.ernet.in/gester | Nucleic Acids Research | Genomics | DNA | 2011 | 20972211 | Valakunja Nagaraja | vraj@mcb1.iisc.ernet.in | Indian Institute of Science (IISc) | Bangalore | Karnataka | IISc | Functional | Database | NA |
| 1548 | BioFuelDB | Comprehensive data of curated biofuel enzymes, their novel homologs identified from diverse metagenomes, and the hybrid prediction tool Benz are presented as a web server which can be used for the prediction of biofuel enzymes from genomic and metagenomic datasets | http://metabiosys.iiserb.ac.in/biofueldb/ | Peer J | Protein Structure | Other | 2017 | 28875065 | Vineet K Sharma | vineetks@iiserb.ac.in | Indian Institute of Science Education and Research (IISERB) | Bhopal | Madhya Pradesh | IISER | Functional | Database | NA |
| 1549 | IL17eScan | Helps in the identification of IL17 using machine-learning approaches | http://metabiosys.iiserb.ac.in/IL17eScan/guide.php | Frontiers in Immunology | BioDrug | Protein | 2017 | 29163505 | Vineet K Sharma | vineetks@iiserb.ac.in | Indian Institute of Science Education and Research (IISERB) | Bhopal | Madhya Pradesh | IISER | Functional | Prediction | NA |
| 1550 | ProInflam | A webserver for the prediction of proinflammatory antigenicity of peptides and proteins | http://metabiosys.iiserb.ac.in/proinflam/ | Journal of Translational Medicine | BioDrug | Protein | 2016 | 27301453 | Vineet K Sharma | vineetks@iiserb.ac.in | Indian Institute of Science Education and Research (IISERB) | Bhopal | Madhya Pradesh | IISER | Functional | Prediction | NA |
| 1551 | 16S classifier | A tool for fast and accurate taxonomic classification of 16S rRNA hypervariable regions in metagenomic datasets | http://metabiosys.iiserb.ac.in/16Sclassifier | PLOS One | Genomics | RNA | 2015 | 25646627 | Vineet K Sharma | vineetks@iiserb.ac.in | Indian Institute of Science Education and Research (IISERB) | Bhopal | Madhya Pradesh | IISER | Functional | Prediction | NA |
| 1568 | Fragment Finder | A web based software to identify similar three:dimensional structural motif | http://cluster.physics.iisc.ernet.in/ff/ | Nucleic Acids Research | Protein Function | Other | 2005 | 15980587 | K Sekar | sekar@physics.iisc.ernet.in | Indian Institute of Science (IISc) | Bangalore | Karnataka | IISc | Non-Functional | Prediction | bio.tools |
| 1569 | ProSTRIP | A method to find similar structural repeats in three:dimensional protein structures | http://cluster.physics.iisc.ernet.in/prostrip/ | Computational Biology and Chemistry | Protein Structure | Protein | 2010 | 20430700 | K Sekar | sekar@physics.iisc.ernet.in | Indian Institute of Science (IISc) | Bangalore | Karnataka | IISc | Non-Functional | Prediction | bio.tools |
| 1570 | SSEP | Secondary structural elements of proteins | http://cluster.physics.iisc.ernet.in/ssep/ | Nucleic Acids Research | Protein Structure | Protein | 2003 | 12824336 | K Sekar | sekar@physics.iisc.ernet.in | Indian Institute of Science (IISc) | Bangalore | Karnataka | IISc | Non-Functional | Database | bio.tools |
| 1594 | Antiinflam | Prediction of anti-inflammatory proteins/peptides | http://metagenomics.iiserb.ac.in/antiinflam/ | Journal of Translational Medicine | BioDrug | Protein | 2017 | 28057002 | Vineet K Sharma | vineetks@iiserb.ac.in | Indian Institute of Science Education and Research (IISERB) | Bhopal | Madhya Pradesh | IISER | Functional | Prediction | NA |
| 1595 | BIOFIN | Protein | http://metagenomics.iiserb.ac.in/biofin/ | Frontiers in biology | BioDrug | Protein | 2016 | 27379078 | Vineet K Sharma | vineetks@iiserb.ac.in | Indian Institute of Science Education and Research (IISERB) | Bhopal | Madhya Pradesh | IISER | Functional | Prediction | NA |
| 1596 | HyPe | Prediction of peptidoglycan hydrolases | http://metagenomics.iiserb.ac.in/hype/ | BMC Genomics | Protein Function | Protein | 2016 | 27229861 | Vineet K Sharma | vineetks@iiserb.ac.in | Indian Institute of Science Education and Research (IISERB) | Bhopal | Madhya Pradesh | IISER | Functional | Prediction | bio.tools |
| 1597 | MP3 | A software tool for the prediction of pathogenic proteins in genomic and metagenomic data | http://metagenomics.iiserb.ac.in/mp3/index.php | PLOS One | Genomics | Protein | 2014 | 24736651 | Vineet K Sharma | vineetks@iiserb.ac.in | Indian Institute of Science Education and Research (IISERB) | Bhopal | Madhya Pradesh | IISER | Functional | Prediction | bio.tools |