Protein Scan: Identify IL-13 inducing peptides or regions within a protein sequence

With the help of "Protein Scan" module, the user can recognize the important regions in the protein sequence, producing IL-13 inducing peptides. These IL-13 inducing regions may be removed or altered for subunit vaccine designing. Additionally, users can also identify novel IL-13 inducing peptides in the given protein sequence. Further, the user can select the length of the peptide sequences fragment to predict IL-13 inducing/non-inducing peptides. We have implemented the eXtreme Gradient Boosting (XGB) based model at the back-end, as it has outperformed the other classifiers. Please visit Help page, for more help.

Type or paste protein sequence in single letter code:

Choose peptide fragment length:
Choose eXtreme Gradient Boosting Probability Threshold:   ❓

Select Visualization approach:  Tabular    Graphical  

       
==== Reference ====
  1. Jain S., Dhall A., Patiyal S. and Raghava G.P.S. (2022) IL13Pred: A method for predicting immunoregulatory cytokine IL-13 inducing peptides. Computers in Biology and Medicine, 2022: 05297.
  2. Jain S, Dhall A, Patiyal S, Raghava GPS. In Silico Tool for Identification, Designing, and Searching of IL13-Inducing Peptides in Antigens. Methods Mol Biol. 2023;2673:329-338.