Crystallisation Resource

Crystal Prediction Tools

  • Surface entropy reduction for crystallization prediction (SERp) server
  • XtalPred Server
  • Protein Crystal Structure Propensity Prediction Server
  • CRYSTALP2
  • [ccp4bb] AW: [ccp4bb] surface charge residues prediction server
  • CCP4BB Tool
  • SECRET
  • SSPF Crystallisation Propensity Predictors

    Research articles

  • ProteinCCD: enabling the design of protein truncation constructs for expression and crystallization experiments
  • A deliberate approach to screening for initial crystallization conditions of biological macromolecules
  • Analysis of secondary structure predictions of Dengue virus type 2 NS2B/NS3 against crystal structure to evaluate the predictive power of the in silico methods
  • A new expression system for protein crystallization using trimeric coiled-coil adaptors
  • Optimal control of particle size in antisolvent crystallization operations
  • ParCrys: a Parzen window density estimation approach to protein crystallization propensity prediction
  • Protein crystallization prediction with a combined feature set
  • From Surface Self-Assembly to Crystallization: Prediction of Protein Crystallization Conditions
  • Toward rational protein crystallization: A Web server for the design of crystallizable protein variants
  • XtalPred: a web server for prediction of protein crystallizability
  • CRYSTALP2: sequence-based protein crystallization propensity prediction
  • Understanding the physical properties that control protein crystallization by analysis of large-scale experimental data
  • Protein disorder prediction: Implications for structural proteomics
  • SYSTEMS AND METHODS FOR MODELING OF CRYSTALLIZATION PROCESSES
  • Predicting protein crystallization propensity from protein sequence
  • Critical assessment of side chain conformation prediction in modelling of single point amino acid mutation
  • Examination of Crystal Nucleation and Polymorph Transitions through Molecular Dynamics Simulations of Hard-Core Screened Coulomb Particles
  • MuD: an interactive web server for the prediction of non-neutral substitutions using protein structural data
  • Crystallization and structure determination of beta secretase and/or beta secretase-like proteins
  • Accurate Prediction of Protein Disordered Regions by Mining Protein Structure Data
  • New surface contacts formed upon reductive lysine methylation: improving the probability of protein crystallization.
  • Statistical Methods for the objective desing of screening procedures fro macromolecular crystallisation
  • Protein Isoelectric Point as a predictor for increased crystallization screening efficiency
  • Protein crystallization using incomplete factorial experiments
  • The protein as a variable in protein crystallization
  • Predicting experimental properties of proteins from sequence by Machine Learning Techniques
  • The use of recombinant methods and molecular engineering in protein crystallization
  • Protein biophysical properties that correlate with crystallization success in Thermotoga maritima: maximum clustering strategy for structural genomics
  • A normalised scale for structural genomics target ranking: The OB-Score
  • prediction of protein crsytallization using collocation of amino acid pairs

    Academia

  • Macromolecular Crystallography Facility at Princeton University
  • Hill Lab Links
  • Virtual Lab with Metalinks
  • Nature Structural Biology Knowledgbase
  • The BartonGroup Univ. of Dundee
  • Joint center for structural genomics
  • The Chen Laboratory
  • Structural Bioinformatics Group at Imperial College London
  • Raz Zarivach Laboratory
  • Crystallographic Resources
  • Molecular Modelling and Crystallographic Computing Facility at Queen's University
  • Strynadka Laboratory
  • Material Studio at Material Research Institute
  • Kim Group at Sungkyunkwan University School of Medicine
  • Crystallization Facilities at the OPPF-UK
  • Crystallographic Construct Design in Bioinformatics and Biological Computing Unit at the Weizmann Institute of Science
  • The Berlin "Protein Structure Factory" initiative
  • Crystallograpy at The University fo Oklahoma US
  • MIT Links
  • Dr. M. Vijayan
  • Dept. of Biophysics, AIIMS

    Databases

  • Links to Protein structural Databases
  • Biological Macromolecule Crystallization Database
  • Target Database for Structural Biology
  • Protein expression purification and crystallization DataBase
  • Protein Data Bank
  • Wrold Wide PDB
  • PDBsum
  • ProtCID-Protein Common Interface Database

    Useful Links

  • Metalink to varioius useful sites
  • CRYSTALLOGRAPHY / SAXS / STRUCTURE ANALYSIS LINKS
  • Protein Structure Prediction Software
  • ROSTLAB for Protein Prediction
  • CASP
  • Bioinformatics.ca Links Directory
  • Biocompare Softwares List
  • Nature Structure Biology Knowledgbase SERVERS and Databases
  • Links - Crystallography, Protein Structure, Protein Chemistry, Proteases etc...
  • Links for Protein Crystallography, Sequence Analysis and Mathematics
  • Useful Links
  • NetSci's List of Crystallography Software
  • eBooks on Crystallization
  • Crystallization Technology Handbook by A. Mersmann (Repost)

    Journals

  • Current Protein and Peptide Science
  • Journal of Applied Crystallography (J APPL CRYSTALLOGR)
  • Crystallography Journals
  • Nature Structural & Molecular Biology

    Commercial Participants

  • Hampton Research
  • Analytical and Crystallization Software
  • Emerald Biosystems