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Dr. G. P. S. Raghava
Bioinformatic Centre
IMTECH, INDIA
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All peptides of the database has been searched in the SWISS-PROT database to extract the proteins having matching peptides.The Swiss-Prot codes of proteins having matching peptides were stored in database reference field of each entry.The summary of these proteins stored locally and provided with hypertext links to SWISS-PROT and GenBank to provide more detailed information.The database have sequences of 995 antigenic proteins. The An example of the antigenic protein is shown below.
| Title | PTPX_MACNE PROTEIN-TYROSINE PHOSPHATASE X PRECURSOR (R-PTP | | GenBank Link | 2811018 | | SWISS-PROT Link | O02695 | | Protein Sequence | MALPLLLLLLLLLPPRVLPAAPSSVPHGRQLPGRL
GCLLEEGLCGASEACVNDGVFGRCQKVPAMDFYRYEVSPVALQRLRVALQKLSGTG
FTWQDDYTQYVMDQELADLPKTYLRHPEASGPARPSKHSIGSERRYSQEGGAALAK
AFRRHLPFLEALSQAPASDALARTRMAQDRPRAEGDDRFSKSILTYVAHTSVLTYP
PGPQAQLPEDLLPRTLSQLQPDELSPKVDSSVERHHLMAALSAYAAQRPPAPPGKG
SLEPQYLLRAPSRMPRPLLSPAVPQKWPSPLGDPEDPPSTGEGARIHTLLKDLQRQ
PAEARGLSDLELDSMAELMAGLMQGMDHRGALGGPGKAALGESGEQADGPKAALRG
ESFPDDGVQDDDDRLYQEVHRLSATLGGLLQDHGSRLSPGALPFAKPLKMERKKSE
RPEASLSSEEETAGVENVKSQTYSKDLLGQQPHSEPGAGAFGELQNQMPGPSEEEQ
SLPAGAQEALGDGLQLEVKPSEEEARGYIVTDRDPLRPEEGRQLVEDVARLLQMPS
STFADVEVLGPAVTFKVGANVQNVTTADVEKATVDNKDKLEETSGLKILQTGVGSK
SKLKFLPPQAEQEDSTKFIALTLVSLACILGVLLASGLIYCLRHSSQHRLKEKLSG
LGRDPGADATAAYQELCRQRMATRPPDRPEGPHTSRISSVSSQFSDGPMPSPSARS
SASSWSEEPVQSNMDISTGHMILSYMEDHLKNKNRLEKEWEALCAYQAEPNSSLVA
QKEENVPKNRSLAVLTYDHSRVLLKAENSHSHSDYINASPIMDHDPRNPAYIATQG
PLPATVADFWQMVWESGCVVIVMLTPLTENGVRQCYHYWPDEGSNLYHIYEVNLVS
EHIWCEDFLVRSFYLKNLQTNETRTVTQFHFLSWYDRGVPSSSRSLLDFRRKVNKC
YRGRSCPIIVHCSDGAGRSGTYVLIDMVLNKMAKGAKEIDIAATLEHLRDQRPGMV
QTKEQFEFALTAVAEEVNAILKALPQ
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