Sliding window Prediction

As an important application, with this tool user can identify regions in a protein, which are contributing in designing antifungal peptide, which may be further removed or altered. The other way round, here users can also search a protein sequence to find out novel antifungal peptides. It will generate the fragments of length selected by the users and predict their induction activity alongwith all the important physico-chemical properties like hydrophobicity, charge pI etc selected by the users in the display option. For more help please visit Help.

Type or paste protein sequence in single letter code:

Choose peptide fragment length:

Select prediction method: Antifp_DS1_binary_model1   Antifp_DS2_binary_model2   Antifp_Main_binary_model3 (Select minimum fragment length of 15)  

Choose SVM threshold: