| PepStr | Predicts 3D structure of peptides using information derived from Beta Turns prediction, secondary structure prediction and finally energy minimization and molecular dynamics. |
| PEP-FOLD | Predicts 3D structure of peptides by predicting SA letter profiles using primary sequence and finally assembles the predicted fragments using modified version of OPEP coarse-grained force field |
| Pepbank | PepBank is a database of peptides based on sequence text mining and public peptide data sources. Only peptides that are 20 amino acids or shorter are stored. Only peptides with available sequences are stored. |
| Peptide Atlas | PeptideAtlas is a multi-organism, publicly accessible compendium of peptides identified in a large set of tandem mass spectrometry proteomics experiments. |
| CellPPD | CellPPD is an in silico method, which is developed to predict and design efficient cell penetrating peptides (CPPs). Major Features include: 1) Designing peptides 2) protein scanning 3) Motif scan |
| TUMORHPD | TumorHPD is a web server for predicting and designing tumor homing peptides. This server allows the users to design tumor homing peptides and their mutants having better tumor homing and physicochemical properties. |
| ANTIBP2 | AntiBP2 server predicts the antibacterial peptides in a protein sequence. |
| DOMINO | DOMINO is an open-access database comprising more than 3900 annotated experiments describing interactions mediated by protein-interaction domains |
| PEPX | PepX contains 505 unique protein-peptide interface clusters from 1431 PDBs, representing the diversity of structural information on protein-peptide complexes available in the Protein Data Bank |