Datasets compiled from PDB (31st March 2018)

This page provides datasets compiled from release of PDB (31st March 2018).These datasets were generated using commonly used protocols like non-redundant chains, structures solved at high resolution. Compilation of more datasets in progress. For more information click help.


Types of DatasetsDescription
of Dataset
NR chainsNo. of residuesDownload
Secondary structure
(assign using DSSP database,
chains using PDB select)
Eight state
(H,B,E,G,I,T,S,C)

Three state
[H=(G,H,I); E=(B,E); C=(T,S)]

Three state
[H=H; E=E; C=(G,I,B,T,S)]
17608


17608


17608
DSSP8


DSSP3_1


DSSP3_2
Data Description
Irregular Secondary structure
Mainly Tight Turns

(Promotif used for assignment)
Beta-Turns I
Beta-Turns I'
Beta-Turns II
Beta-Turns II'
Beta-Turns IV
Beta-Turns VIa1
Beta-Turns VIa2
Beta-Turns VIb
Beta-Turns VIII

16195
7070
12429
5393
16183
1397
406
2350
11821
4406658
2275954
3662852
1787241
4404519
492900
152431
769642
3608645
BTI16195
BTI'7070
BTII12429
BTII'5393
BTIV16183
BTVIa1_1397
BTVIa2_406
BTVIb2350
BTVIII11821
Data Description
Gamma-turn-C
Gamma-turn-I
2889
12720
1101032
3812599
GT2889
GT12720
Data Description
Buldge-B
Buldge-C
Buldge-G
Bulge-S
Buldge-W
524
9214
6931
1304
1752
193407
2677278
2079636
460423
621075
BLGB524
BLGC9214
BLGG6931
BLGS1304
BLGW1752
Hairpin129843606713HPIN12984
Psiloop2460845957PLOOP2460
DNA/RNA interactingresiduesDNA
RNA
560
415
168746
117841
DNA560
RNA415
DNA/RNA interacting proteinsDNA
RNA
560
415
DNA560
RNA415
Nucleotide interacting residuessATP
ADP
GTP
GDP
NAD
FAD
FMN
UDP
313
353
83
120
140
172
117
68
127493
152419
40442
41412
53276
73733
33514
25064
ATP313
ADP353
GTP83
GDP120
NAD140
FAD172
FMN117
UDP68
Nucleotide interacting ProteinsATP
ADP
GTP
GDP
NAD
FAD
FMN
UDP
313
353
83
120
140
172
117
68
ATP313
ADP353
GTP83
GDP120
NAD140
FAD172
FMN117
UDP68
Ligand binding residuesSulphate
Phosphate
NAG
HEM
BME
EDO
PLP
3312
1299
727
176
191
1507
65
954518
401977
267137
48737
52910
438555
26754
SO4_3312
PO4_1299
NAG727
HEM176
BME191
EDO1507
PLP65
Ligand binding proteinsSulphate
Phosphate
NAG
HEM
BME
EDO
PLP
3312
1299
727
176
191
1507
65
SO4_3312
PO4_1299
NAG727
HEM176
BME191
EDO1507
PLP65
Metal interacting residuesFe
Mg
Ca
Mn
Zn
Co
Ni
215
1908
1402
521
1660
201
355
69779
655860
468225
179324
487759
56079
95902
Fe215
MG1908
CA1402
MN521
ZN1660
CO201
NI355
Metal interacting proteinsFe
Mg
Ca
Mn
Zn
Co
Ni
215
1908
1402
521
1660
201
355
Fe215
MG1908
CA1402
MN521
ZN1660
CO201
NI355