Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_006209 20 299 XP_006713721 20 299 NP_000245 17 4312 XP_006711832 17 4312 XP_005273200 17 4312 XP_005273198 17 4312 NP_079334 16 5631 NP_001243529 16 5631 NP_001269307 16 5631 NP_001243528 16 5631 NP_001243530 16 5631 XP_005250646 16 7355 XP_005250645 16 7355 XP_005250644 16 7355 XP_005250643 16 7355 XP_005250642 16 7355 NP_077291 16 7355 NP_001165907 15 9605 NP_002628 15 9605 NP_000159 15 9605 NP_001116142 15 9605 NP_001073896 15 9605 NP_060276 15 9605 NP_060145 15 9605 NP_001075956 15 9605 NP_001165447 15 9605 NP_079414 15 9605 NP_075065 15 9605 NP_849193 15 9605 XP_006724724 15 9605 XP_005256172 15 9605 XP_005266602 15 9605 XP_005249761 15 9605 XP_005249760 15 9605 XP_006714950 15 9605 XP_006713080 15 9605 XP_005263859 15 9605 NP_001075955 15 9605 NP_057558 15 9605>NP_006209 Length = 1068 Score = 20.4 bits (41), Expect = 299 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 YSNAGLSNR 9 YS+AGLSNR Sbjct: 508 YSHAGLSNR 516>XP_006713721 Length = 1068 Score = 20.4 bits (41), Expect = 299 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 YSNAGLSNR 9 YS+AGLSNR Sbjct: 508 YSHAGLSNR 516>NP_000245 Length = 1265 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 YSNAGLSN 8 Y NAGL N Sbjct: 285 YPNAGLPN 292>XP_006711832 Length = 1139 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 YSNAGLSN 8 Y NAGL N Sbjct: 285 YPNAGLPN 292>XP_005273200 Length = 1214 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 YSNAGLSN 8 Y NAGL N Sbjct: 285 YPNAGLPN 292>XP_005273198 Length = 1264 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 YSNAGLSN 8 Y NAGL N Sbjct: 284 YPNAGLPN 291>NP_079334 Length = 759 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 SNAGLSNR 9 SNAGL+ R Sbjct: 669 SNAGLTGR 676>NP_001243529 Length = 717 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 SNAGLSNR 9 SNAGL+ R Sbjct: 627 SNAGLTGR 634>NP_001269307 Length = 633 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 SNAGLSNR 9 SNAGL+ R Sbjct: 543 SNAGLTGR 550>NP_001243528 Length = 736 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 SNAGLSNR 9 SNAGL+ R Sbjct: 646 SNAGLTGR 653>NP_001243530 Length = 746 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 SNAGLSNR 9 SNAGL+ R Sbjct: 656 SNAGLTGR 663>XP_005250646 Length = 118 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 6/9 (66%) Query: 1 YSNAGLSNR 9 Y +GL NR Sbjct: 9 YGTSGLDNR 17>XP_005250645 Length = 119 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 6/9 (66%) Query: 1 YSNAGLSNR 9 Y +GL NR Sbjct: 9 YGTSGLDNR 17>XP_005250644 Length = 119 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 6/9 (66%) Query: 1 YSNAGLSNR 9 Y +GL NR Sbjct: 9 YGTSGLDNR 17>XP_005250643 Length = 119 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 6/9 (66%) Query: 1 YSNAGLSNR 9 Y +GL NR Sbjct: 9 YGTSGLDNR 17>XP_005250642 Length = 119 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 6/9 (66%) Query: 1 YSNAGLSNR 9 Y +GL NR Sbjct: 9 YGTSGLDNR 17>NP_077291 Length = 118 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 6/9 (66%) Query: 1 YSNAGLSNR 9 Y +GL NR Sbjct: 9 YGTSGLDNR 17>NP_001165907 Length = 1151 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 YSNAGLSNR 9 YS+ G +NR Sbjct: 483 YSSLGCNNR 491>NP_002628 Length = 1223 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 YSNAGLSNR 9 YS+ G +NR Sbjct: 483 YSSLGCNNR 491>NP_000159 Length = 1580 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 YSNAGL 6 YSN+GL Sbjct: 723 YSNSGL 728>NP_001116142 Length = 1210 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 YSNAGLSNR 9 YS+ G +NR Sbjct: 483 YSSLGCNNR 491>NP_001073896 Length = 1577 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 SNAGLSNR 9 SN G SNR Sbjct: 48 SNCGESNR 55>NP_060276 Length = 295 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 YSNAGLS 7 YSN GL+ Sbjct: 145 YSNVGLA 151>NP_060145 Length = 1310 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 YSNAGL 6 Y+NAGL Sbjct: 1300 YTNAGL 1305>NP_001075956 Length = 528 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 SNAGLS 7 SNAGLS Sbjct: 245 SNAGLS 250>NP_001165447 Length = 1310 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 YSNAGL 6 Y+NAGL Sbjct: 1300 YTNAGL 1305>NP_079414 Length = 944 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 YSNAGL 6 Y+NAGL Sbjct: 217 YNNAGL 222>NP_075065 Length = 541 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 SNAGLS 7 SNAGLS Sbjct: 245 SNAGLS 250>NP_849193 Length = 826 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 YSNAGLSNR 9 Y AG++NR Sbjct: 609 YQIAGMANR 617>XP_006724724 Length = 1164 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 YSNAGLSNR 9 YS+ G +NR Sbjct: 483 YSSLGCNNR 491>XP_005256172 Length = 515 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 SNAGLS 7 SNAGLS Sbjct: 248 SNAGLS 253>XP_005266602 Length = 922 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 YSNAGL 6 Y+NAGL Sbjct: 195 YNNAGL 200>XP_005249761 Length = 1580 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 YSNAGL 6 YSN+GL Sbjct: 723 YSNSGL 728>XP_005249760 Length = 1580 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 YSNAGL 6 YSN+GL Sbjct: 723 YSNSGL 728>XP_006714950 Length = 1304 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 YSNAGL 6 Y+NAGL Sbjct: 1294 YTNAGL 1299>XP_006713080 Length = 804 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 YSNAGLSNR 9 Y AG++NR Sbjct: 609 YQIAGMANR 617>XP_005263859 Length = 1606 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 SNAGLSNR 9 SN G SNR Sbjct: 79 SNCGESNR 86>NP_001075955 Length = 544 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 SNAGLS 7 SNAGLS Sbjct: 248 SNAGLS 253>NP_057558 Length = 467 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 NAGLSNR 9 N G+SNR Sbjct: 58 NVGVSNR 64Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.303 0.119 0.324 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 520,652 Number of extensions: 784 Number of successful extensions: 39 Number of sequences better than 10000.0: 39 Number of HSP's gapped: 39 Number of HSP's successfully gapped: 39 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.3 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |