Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_003473 20 390 NP_733751 20 390 XP_006719679 20 390 XP_005269219 20 390 XP_006719678 20 390 XP_006719677 20 390 XP_006716142 20 390 XP_005250088 20 390 XP_006716141 20 390 XP_005250085 20 390 XP_006716140 20 390 XP_005250084 20 390 XP_005250083 20 390 XP_005250082 20 390 XP_005248127 17 2528 XP_005248124 17 2528 XP_005248123 17 2528 XP_005248122 17 2528 XP_005248121 17 2528 XP_006714059 17 2528 XP_005248119 17 2528 XP_005248118 17 2528 XP_005248117 17 2528 XP_005248116 17 2528 XP_005248115 17 2528 XP_005248114 17 2528 NP_839943 17 3301 NP_109587 16 5631 NP_997191 16 7355 NP_001152956 16 7355 XP_006711682 16 7355 NP_005198 15 9605 NP_009123 15 9605>NP_003473 Length = 5537 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 YLAQSRIQG 9 YLA+SRIQG Sbjct: 5400 YLARSRIQG 5408>NP_733751 Length = 4911 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 YLAQSRIQG 9 YLA+SRIQG Sbjct: 4774 YLARSRIQG 4782>XP_006719679 Length = 5536 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 YLAQSRIQG 9 YLA+SRIQG Sbjct: 5399 YLARSRIQG 5407>XP_005269219 Length = 5537 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 YLAQSRIQG 9 YLA+SRIQG Sbjct: 5400 YLARSRIQG 5408>XP_006719678 Length = 5539 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 YLAQSRIQG 9 YLA+SRIQG Sbjct: 5402 YLARSRIQG 5410>XP_006719677 Length = 5540 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 YLAQSRIQG 9 YLA+SRIQG Sbjct: 5403 YLARSRIQG 5411>XP_006716142 Length = 4927 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 YLAQSRIQG 9 YLA+SRIQG Sbjct: 4790 YLARSRIQG 4798>XP_005250088 Length = 4928 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 YLAQSRIQG 9 YLA+SRIQG Sbjct: 4791 YLARSRIQG 4799>XP_006716141 Length = 4959 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 YLAQSRIQG 9 YLA+SRIQG Sbjct: 4822 YLARSRIQG 4830>XP_005250085 Length = 4979 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 YLAQSRIQG 9 YLA+SRIQG Sbjct: 4842 YLARSRIQG 4850>XP_006716140 Length = 4982 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 YLAQSRIQG 9 YLA+SRIQG Sbjct: 4845 YLARSRIQG 4853>XP_005250084 Length = 4982 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 YLAQSRIQG 9 YLA+SRIQG Sbjct: 4845 YLARSRIQG 4853>XP_005250083 Length = 4982 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 YLAQSRIQG 9 YLA+SRIQG Sbjct: 4845 YLARSRIQG 4853>XP_005250082 Length = 4983 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 YLAQSRIQG 9 YLA+SRIQG Sbjct: 4846 YLARSRIQG 4854>XP_005248127 Length = 1322 Score = 17.3 bits (33), Expect = 2528 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 LAQSRIQG 9 LAQ RIQG Sbjct: 541 LAQQRIQG 548>XP_005248124 Length = 1467 Score = 17.3 bits (33), Expect = 2528 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 LAQSRIQG 9 LAQ RIQG Sbjct: 382 LAQQRIQG 389>XP_005248123 Length = 1471 Score = 17.3 bits (33), Expect = 2528 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 LAQSRIQG 9 LAQ RIQG Sbjct: 382 LAQQRIQG 389>XP_005248122 Length = 1471 Score = 17.3 bits (33), Expect = 2528 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 LAQSRIQG 9 LAQ RIQG Sbjct: 382 LAQQRIQG 389>XP_005248121 Length = 1543 Score = 17.3 bits (33), Expect = 2528 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 LAQSRIQG 9 LAQ RIQG Sbjct: 454 LAQQRIQG 461>XP_006714059 Length = 1600 Score = 17.3 bits (33), Expect = 2528 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 LAQSRIQG 9 LAQ RIQG Sbjct: 541 LAQQRIQG 548>XP_005248119 Length = 1601 Score = 17.3 bits (33), Expect = 2528 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 LAQSRIQG 9 LAQ RIQG Sbjct: 541 LAQQRIQG 548>XP_005248118 Length = 1602 Score = 17.3 bits (33), Expect = 2528 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 LAQSRIQG 9 LAQ RIQG Sbjct: 541 LAQQRIQG 548>XP_005248117 Length = 1626 Score = 17.3 bits (33), Expect = 2528 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 LAQSRIQG 9 LAQ RIQG Sbjct: 541 LAQQRIQG 548>XP_005248116 Length = 1627 Score = 17.3 bits (33), Expect = 2528 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 LAQSRIQG 9 LAQ RIQG Sbjct: 541 LAQQRIQG 548>XP_005248115 Length = 1629 Score = 17.3 bits (33), Expect = 2528 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 LAQSRIQG 9 LAQ RIQG Sbjct: 541 LAQQRIQG 548>XP_005248114 Length = 1630 Score = 17.3 bits (33), Expect = 2528 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 LAQSRIQG 9 LAQ RIQG Sbjct: 541 LAQQRIQG 548>NP_839943 Length = 1631 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 YLAQSRIQG 9 YL Q+ IQG Sbjct: 278 YLTQAEIQG 286>NP_109587 Length = 400 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 YLAQSRIQG 9 Y+A R+QG Sbjct: 233 YMAPERLQG 241>NP_997191 Length = 1888 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 LAQSRIQ 8 LAQSR+Q Sbjct: 1874 LAQSRLQ 1880>NP_001152956 Length = 1736 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 LAQSRIQ 8 LAQSR+Q Sbjct: 1722 LAQSRLQ 1728>XP_006711682 Length = 1739 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 LAQSRIQ 8 LAQSR+Q Sbjct: 1725 LAQSRLQ 1731>NP_005198 Length = 303 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 AQSRIQG 9 AQ+R+QG Sbjct: 24 AQTRLQG 30>NP_009123 Length = 1047 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 LAQSRIQG 9 +AQ R+QG Sbjct: 671 IAQKRMQG 678Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.322 0.134 0.361 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 296,997 Number of extensions: 334 Number of successful extensions: 33 Number of sequences better than 10000.0: 33 Number of HSP's gapped: 33 Number of HSP's successfully gapped: 33 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.9 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |