Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_000537 19 665 NP_001263689 19 665 NP_001119584 19 665 NP_001119590 19 665 NP_001263690 19 665 NP_001119587 19 665 NP_001263626 19 665 XP_006713481 18 1482 XP_005265642 18 1482 XP_005265641 18 1482 XP_006713479 18 1482 NP_004794 18 1482 NP_689957 17 2528 NP_114480 17 3301 NP_114481 17 3301 NP_061737 17 3301 NP_056171 16 5631 NP_874365 16 5631 NP_115271 16 5631 NP_061749 16 5631 NP_694972 16 7355 NP_001136272 15 9605 NP_899645 15 9605 NP_899647 15 9605 NP_899648 15 9605 NP_004281 15 9605 NP_001188294 15 9605 NP_899646 15 9605 NP_003310 15 9605 NP_597676 15 9605 NP_001243779 15 9605 NP_001035100 15 9605 NP_002217 15 9605 NP_660142 15 9605 NP_775922 15 9605 XP_005268598 15 9605 XP_005268597 15 9605 XP_005268596 15 9605 XP_005268595 15 9605 XP_005268594 15 9605 XP_005268593 15 9605 XP_006712787 15 9605 XP_006712786 15 9605 NP_001254479 15 9605 NP_597681 15 9605>NP_000537 Length = 393 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 YFTLQIRVR 9 YFTLQIR R Sbjct: 327 YFTLQIRGR 335>NP_001263689 Length = 354 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 YFTLQIRVR 9 YFTLQIR R Sbjct: 288 YFTLQIRGR 296>NP_001119584 Length = 393 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 YFTLQIRVR 9 YFTLQIR R Sbjct: 327 YFTLQIRGR 335>NP_001119590 Length = 354 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 YFTLQIRVR 9 YFTLQIR R Sbjct: 288 YFTLQIRGR 296>NP_001263690 Length = 354 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 YFTLQIRVR 9 YFTLQIR R Sbjct: 288 YFTLQIRGR 296>NP_001119587 Length = 261 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 YFTLQIRVR 9 YFTLQIR R Sbjct: 195 YFTLQIRGR 203>NP_001263626 Length = 234 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 YFTLQIRVR 9 YFTLQIR R Sbjct: 168 YFTLQIRGR 176>XP_006713481 Length = 555 Score = 18.1 bits (35), Expect = 1482 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 YFTLQIRVR 9 YFTL +R+R Sbjct: 409 YFTLSLRMR 417>XP_005265642 Length = 594 Score = 18.1 bits (35), Expect = 1482 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 YFTLQIRVR 9 YFTL +R+R Sbjct: 395 YFTLSLRMR 403>XP_005265641 Length = 594 Score = 18.1 bits (35), Expect = 1482 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 YFTLQIRVR 9 YFTL +R+R Sbjct: 395 YFTLSLRMR 403>XP_006713479 Length = 608 Score = 18.1 bits (35), Expect = 1482 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 YFTLQIRVR 9 YFTL +R+R Sbjct: 409 YFTLSLRMR 417>NP_004794 Length = 594 Score = 18.1 bits (35), Expect = 1482 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 YFTLQIRVR 9 YFTL +R+R Sbjct: 395 YFTLSLRMR 403>NP_689957 Length = 2213 Score = 17.3 bits (33), Expect = 2528 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 YFTLQIR 7 YFT+Q+R Sbjct: 1511 YFTMQVR 1517>NP_114480 Length = 837 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 YFTLQIRVR 9 YF+LQ+R R Sbjct: 178 YFSLQLRGR 186>NP_114481 Length = 750 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 YFTLQIRVR 9 YF+LQ+R R Sbjct: 178 YFSLQLRGR 186>NP_061737 Length = 935 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 YFTLQIRVR 9 YF+LQ+R R Sbjct: 178 YFSLQLRGR 186>NP_056171 Length = 1630 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 YFTLQIRV 8 YF L++RV Sbjct: 1360 YFELEVRV 1367>NP_874365 Length = 1655 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 YFTLQIRV 8 YF L++RV Sbjct: 1360 YFELEVRV 1367>NP_115271 Length = 820 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 YFTLQIRV 8 YF+L +RV Sbjct: 177 YFSLMVRV 184>NP_061749 Length = 930 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 YFTLQIRV 8 YF+L +RV Sbjct: 177 YFSLMVRV 184>NP_694972 Length = 1330 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 YFTLQI 6 YFTLQ+ Sbjct: 851 YFTLQL 856>NP_001136272 Length = 3144 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 FTLQIR 7 FTLQ+R Sbjct: 2578 FTLQVR 2583>NP_899645 Length = 348 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 YFTLQIR 7 YF +QIR Sbjct: 124 YFEIQIR 130>NP_899647 Length = 474 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 YFTLQIR 7 YF +QIR Sbjct: 250 YFEIQIR 256>NP_899648 Length = 474 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 YFTLQIR 7 YF +QIR Sbjct: 250 YFEIQIR 256>NP_004281 Length = 474 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 YFTLQIR 7 YF +QIR Sbjct: 250 YFEIQIR 256>NP_001188294 Length = 474 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 YFTLQIR 7 YF +QIR Sbjct: 250 YFEIQIR 256>NP_899646 Length = 474 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 YFTLQIR 7 YF +QIR Sbjct: 250 YFEIQIR 256>NP_003310 Length = 26926 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 YFTLQIRVR 9 YF +Q RV+ Sbjct: 4174 YFNVQSRVK 4182>NP_597676 Length = 27051 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 YFTLQIRVR 9 YF +Q RV+ Sbjct: 4299 YFNVQSRVK 4307>NP_001243779 Length = 34350 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 YFTLQIRVR 9 YF +Q RV+ Sbjct: 4220 YFNVQSRVK 4228>NP_001035100 Length = 235 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 FTLQIRV 8 FTL++RV Sbjct: 45 FTLRVRV 51>NP_002217 Length = 1238 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 YFTLQIRVR 9 + LQIRVR Sbjct: 189 HLELQIRVR 197>NP_660142 Length = 1200 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 YFTLQIRVR 9 + LQIRVR Sbjct: 189 HLELQIRVR 197>NP_775922 Length = 6996 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 TLQIRVR 9 TL+IR+R Sbjct: 5733 TLEIRIR 5739>XP_005268598 Length = 348 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 YFTLQIR 7 YF +QIR Sbjct: 124 YFEIQIR 130>XP_005268597 Length = 348 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 YFTLQIR 7 YF +QIR Sbjct: 124 YFEIQIR 130>XP_005268596 Length = 348 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 YFTLQIR 7 YF +QIR Sbjct: 124 YFEIQIR 130>XP_005268595 Length = 474 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 YFTLQIR 7 YF +QIR Sbjct: 250 YFEIQIR 256>XP_005268594 Length = 474 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 YFTLQIR 7 YF +QIR Sbjct: 250 YFEIQIR 256>XP_005268593 Length = 474 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 YFTLQIR 7 YF +QIR Sbjct: 250 YFEIQIR 256>XP_006712787 Length = 33978 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 YFTLQIRVR 9 YF +Q RV+ Sbjct: 4221 YFNVQSRVK 4229>XP_006712786 Length = 35484 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 YFTLQIRVR 9 YF +Q RV+ Sbjct: 4221 YFNVQSRVK 4229>NP_001254479 Length = 35991 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 YFTLQIRVR 9 YF +Q RV+ Sbjct: 4537 YFNVQSRVK 4545>NP_597681 Length = 27118 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 YFTLQIRVR 9 YF +Q RV+ Sbjct: 4366 YFNVQSRVK 4374Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.352 0.157 0.459 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 364,079 Number of extensions: 498 Number of successful extensions: 45 Number of sequences better than 10000.0: 45 Number of HSP's gapped: 45 Number of HSP's successfully gapped: 45 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 14 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.9 bits) S2: 28 (15.4 bits)
|
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |