Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_005742 18 1135 NP_671714 18 1135 XP_006715890 18 1135 XP_005250160 18 1135 XP_005250159 18 1135 NP_002061 17 4312 NP_002060 17 4312 NP_001243343 17 4312 NP_001269549 17 4312 NP_001269547 17 4312 NP_001269546 17 4312 NP_001269548 17 4312 NP_620073 17 4312 NP_066268 17 4312 NP_001159897 17 4312 NP_006487 17 4312 NP_005263 16 5631 NP_653082 16 5631 NP_000163 16 5631 NP_001095856 16 5631 NP_001230178 15 9605 NP_056127 15 9605 NP_001230176 15 9605 NP_001034565 15 9605 NP_002171 15 9605 NP_001070818 15 9605 NP_001230177 15 9605 XP_005274034 15 9605 XP_005274033 15 9605 XP_006714407 15 9605 XP_006714406 15 9605 XP_006714405 15 9605 XP_005263349 15 9605 XP_005263348 15 9605 XP_005263347 15 9605 XP_005263346 15 9605 XP_005263345 15 9605 XP_005263344 15 9605 XP_005263343 15 9605 XP_005263342 15 9605 XP_005263341 15 9605 XP_005263340 15 9605 XP_005263339 15 9605>NP_005742 Length = 3907 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VVKTTAVVE 9 VVKTTA VE Sbjct: 1738 VVKTTAAVE 1746>NP_671714 Length = 3899 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VVKTTAVVE 9 VVKTTA VE Sbjct: 1738 VVKTTAAVE 1746>XP_006715890 Length = 3860 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VVKTTAVVE 9 VVKTTA VE Sbjct: 1691 VVKTTAAVE 1699>XP_005250160 Length = 3939 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VVKTTAVVE 9 VVKTTA VE Sbjct: 1770 VVKTTAAVE 1778>XP_005250159 Length = 3952 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VVKTTAVVE 9 VVKTTA VE Sbjct: 1770 VVKTTAAVE 1778>NP_002061 Length = 355 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 VKTTAVVE 9 VKTT +VE Sbjct: 180 VKTTGIVE 187>NP_002060 Length = 354 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 VKTTAVVE 9 VKTT +VE Sbjct: 179 VKTTGIVE 186>NP_001243343 Length = 302 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 VKTTAVVE 9 VKTT +VE Sbjct: 127 VKTTGIVE 134>NP_001269549 Length = 339 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 VKTTAVVE 9 VKTT +VE Sbjct: 164 VKTTGIVE 171>NP_001269547 Length = 274 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 VKTTAVVE 9 VKTT +VE Sbjct: 99 VKTTGIVE 106>NP_001269546 Length = 303 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 VKTTAVVE 9 VKTT +VE Sbjct: 128 VKTTGIVE 135>NP_001269548 Length = 339 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 VKTTAVVE 9 VKTT +VE Sbjct: 164 VKTTGIVE 171>NP_620073 Length = 354 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 VKTTAVVE 9 VKTT +VE Sbjct: 180 VKTTGIVE 187>NP_066268 Length = 354 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 VKTTAVVE 9 VKTT +VE Sbjct: 180 VKTTGIVE 187>NP_001159897 Length = 318 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 VKTTAVVE 9 VKTT +VE Sbjct: 143 VKTTGIVE 150>NP_006487 Length = 354 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 VKTTAVVE 9 VKTT +VE Sbjct: 179 VKTTGIVE 186>NP_005263 Length = 354 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 VKTTAVVE 9 VKTT ++E Sbjct: 179 VKTTGIIE 186>NP_653082 Length = 350 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 VKTTAVVE 9 VKTT ++E Sbjct: 175 VKTTGIIE 182>NP_000163 Length = 350 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 VKTTAVVE 9 VKTT ++E Sbjct: 175 VKTTGIIE 182>NP_001095856 Length = 354 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 VKTTAVVE 9 VKTT ++E Sbjct: 179 VKTTGIIE 186>NP_001230178 Length = 544 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VVKTTAVVE 9 V+KTT+ V+ Sbjct: 260 VIKTTSAVK 268>NP_056127 Length = 5005 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 KTTAVVE 9 +TTA+VE Sbjct: 1614 RTTAIVE 1620>NP_001230176 Length = 491 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VVKTTAVVE 9 V+KTT+ V+ Sbjct: 207 VIKTTSAVK 215>NP_001034565 Length = 390 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VVKTTAVVE 9 V+KTT+ V+ Sbjct: 106 VIKTTSAVK 114>NP_002171 Length = 993 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 KTTAVVE 9 KTT VVE Sbjct: 220 KTTTVVE 226>NP_001070818 Length = 569 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VVKTTAVVE 9 V+KTT+ V+ Sbjct: 285 VIKTTSAVK 293>NP_001230177 Length = 544 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VVKTTAVVE 9 V+KTT+ V+ Sbjct: 260 VIKTTSAVK 268>XP_005274034 Length = 508 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 KTTAVVE 9 KTT VVE Sbjct: 220 KTTTVVE 226>XP_005274033 Length = 540 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 KTTAVVE 9 KTT VVE Sbjct: 220 KTTTVVE 226>XP_006714407 Length = 5004 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 KTTAVVE 9 +TTA+VE Sbjct: 1613 RTTAIVE 1619>XP_006714406 Length = 3680 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 KTTAVVE 9 +TTA+VE Sbjct: 1614 RTTAIVE 1620>XP_006714405 Length = 4103 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 KTTAVVE 9 +TTA+VE Sbjct: 691 RTTAIVE 697>XP_005263349 Length = 4410 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 KTTAVVE 9 +TTA+VE Sbjct: 998 RTTAIVE 1004>XP_005263348 Length = 4443 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 KTTAVVE 9 +TTA+VE Sbjct: 1031 RTTAIVE 1037>XP_005263347 Length = 4640 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 KTTAVVE 9 +TTA+VE Sbjct: 1614 RTTAIVE 1620>XP_005263346 Length = 4983 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 KTTAVVE 9 +TTA+VE Sbjct: 1571 RTTAIVE 1577>XP_005263345 Length = 4991 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 KTTAVVE 9 +TTA+VE Sbjct: 1614 RTTAIVE 1620>XP_005263344 Length = 5005 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 KTTAVVE 9 +TTA+VE Sbjct: 1614 RTTAIVE 1620>XP_005263343 Length = 5009 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 KTTAVVE 9 +TTA+VE Sbjct: 1614 RTTAIVE 1620>XP_005263342 Length = 5025 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 KTTAVVE 9 +TTA+VE Sbjct: 1613 RTTAIVE 1619>XP_005263341 Length = 5026 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 KTTAVVE 9 +TTA+VE Sbjct: 1614 RTTAIVE 1620>XP_005263340 Length = 5026 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 KTTAVVE 9 +TTA+VE Sbjct: 1614 RTTAIVE 1620>XP_005263339 Length = 5026 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 KTTAVVE 9 +TTA+VE Sbjct: 1614 RTTAIVE 1620Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.309 0.118 0.267 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 232,778 Number of extensions: 238 Number of successful extensions: 43 Number of sequences better than 10000.0: 43 Number of HSP's gapped: 43 Number of HSP's successfully gapped: 43 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.6 bits) S2: 28 (15.4 bits)
|
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |