Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_000042 18 1135 XP_006718908 18 1135 XP_005271621 18 1135 XP_006718907 18 1135 XP_006718906 18 1135 XP_005271619 18 1135 XP_005271618 18 1135 NP_001243353 16 7355 NP_000846 16 7355 NP_001230075 15 9605 NP_002524 15 9605 NP_001230076 15 9605 NP_996671 15 9605 NP_872332 15 9605 XP_006720125 15 9605 XP_005267432 15 9605 XP_005267431 15 9605 XP_005267430 15 9605 XP_006711841 15 9605 XP_006711840 15 9605 XP_006711839 15 9605 XP_006711838 15 9605 XP_006711837 15 9605 XP_006711836 15 9605 XP_006711835 15 9605>NP_000042 Length = 3056 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VVERVLMRL 9 V ERVLMRL Sbjct: 3005 VAERVLMRL 3013>XP_006718908 Length = 1708 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VVERVLMRL 9 V ERVLMRL Sbjct: 1657 VAERVLMRL 1665>XP_005271621 Length = 2708 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VVERVLMRL 9 V ERVLMRL Sbjct: 2657 VAERVLMRL 2665>XP_006718907 Length = 3050 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VVERVLMRL 9 V ERVLMRL Sbjct: 2999 VAERVLMRL 3007>XP_006718906 Length = 3056 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VVERVLMRL 9 V ERVLMRL Sbjct: 3005 VAERVLMRL 3013>XP_005271619 Length = 3056 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VVERVLMRL 9 V ERVLMRL Sbjct: 3005 VAERVLMRL 3013>XP_005271618 Length = 3056 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VVERVLMRL 9 V ERVLMRL Sbjct: 3005 VAERVLMRL 3013>NP_001243353 Length = 763 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 ERVLMRL 9 ERVL+RL Sbjct: 376 ERVLLRL 382>NP_000846 Length = 732 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 ERVLMRL 9 ERVL+RL Sbjct: 376 ERVLLRL 382>NP_001230075 Length = 667 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 VERVLMRL 9 V RVLM+L Sbjct: 297 VNRVLMKL 304>NP_002524 Length = 856 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 VERVLMRL 9 V RVLM+L Sbjct: 486 VNRVLMKL 493>NP_001230076 Length = 765 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 VERVLMRL 9 V RVLM+L Sbjct: 395 VNRVLMKL 402>NP_996671 Length = 750 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 VERVLMRL 9 V RVLM+L Sbjct: 380 VNRVLMKL 387>NP_872332 Length = 167 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VVERVLMRL 9 +VER+ +RL Sbjct: 59 IVERMYLRL 67>XP_006720125 Length = 167 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VVERVLMRL 9 +VER+ +RL Sbjct: 59 IVERMYLRL 67>XP_005267432 Length = 167 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VVERVLMRL 9 +VER+ +RL Sbjct: 59 IVERMYLRL 67>XP_005267431 Length = 167 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VVERVLMRL 9 +VER+ +RL Sbjct: 59 IVERMYLRL 67>XP_005267430 Length = 167 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VVERVLMRL 9 +VER+ +RL Sbjct: 59 IVERMYLRL 67>XP_006711841 Length = 592 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 VERVLMRL 9 V RVLM+L Sbjct: 222 VNRVLMKL 229>XP_006711840 Length = 640 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 VERVLMRL 9 V RVLM+L Sbjct: 270 VNRVLMKL 277>XP_006711839 Length = 695 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 VERVLMRL 9 V RVLM+L Sbjct: 486 VNRVLMKL 493>XP_006711838 Length = 728 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 VERVLMRL 9 V RVLM+L Sbjct: 486 VNRVLMKL 493>XP_006711837 Length = 738 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 VERVLMRL 9 V RVLM+L Sbjct: 368 VNRVLMKL 375>XP_006711836 Length = 738 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 VERVLMRL 9 V RVLM+L Sbjct: 368 VNRVLMKL 375>XP_006711835 Length = 828 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 VERVLMRL 9 V RVLM+L Sbjct: 486 VNRVLMKL 493Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.348 0.155 0.378 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 316,032 Number of extensions: 341 Number of successful extensions: 25 Number of sequences better than 10000.0: 25 Number of HSP's gapped: 25 Number of HSP's successfully gapped: 25 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 14 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.7 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |