Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_068838 17 3301 XP_005262246 17 3301 XP_005262245 17 3301 XP_005262244 17 3301 XP_006724750 17 3301 XP_005262243 17 3301 NP_000622 16 5631 NP_004481 16 7355 NP_079216 16 7355 XP_005273708 16 7355 XP_006716465 16 7355 XP_005273707 16 7355 XP_006712520 16 7355 XP_005246534 16 7355 NP_004251 15 9605 NP_001460 15 9605 NP_001275906 15 9605 NP_001275905 15 9605 NP_001275907 15 9605 NP_036424 15 9605 NP_000258 15 9605 NP_001035957 15 9605 NP_001269264 15 9605 NP_001245257 15 9605 XP_006722776 15 9605 XP_006721990 15 9605 XP_006721989 15 9605 XP_005258041 15 9605 XP_006721988 15 9605 XP_006721987 15 9605 XP_006721986 15 9605 XP_005258040 15 9605 XP_006721985 15 9605>NP_068838 Length = 761 Score = 16.9 bits (32), Expect = 3301 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 3 VAIEEDL 9 VAIEEDL Sbjct: 98 VAIEEDL 104>XP_005262246 Length = 761 Score = 16.9 bits (32), Expect = 3301 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 3 VAIEEDL 9 VAIEEDL Sbjct: 98 VAIEEDL 104>XP_005262245 Length = 807 Score = 16.9 bits (32), Expect = 3301 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 3 VAIEEDL 9 VAIEEDL Sbjct: 98 VAIEEDL 104>XP_005262244 Length = 807 Score = 16.9 bits (32), Expect = 3301 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 3 VAIEEDL 9 VAIEEDL Sbjct: 98 VAIEEDL 104>XP_006724750 Length = 807 Score = 16.9 bits (32), Expect = 3301 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 3 VAIEEDL 9 VAIEEDL Sbjct: 98 VAIEEDL 104>XP_005262243 Length = 807 Score = 16.9 bits (32), Expect = 3301 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 3 VAIEEDL 9 VAIEEDL Sbjct: 98 VAIEEDL 104>NP_000622 Length = 339 Score = 16.2 bits (30), Expect = 5631 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 VAIEEDL 9 +A+EEDL Sbjct: 255 IAVEEDL 261>NP_004481 Length = 540 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VSVAIEEDL 9 +SVA+EE L Sbjct: 396 LSVAVEEGL 404>NP_079216 Length = 1870 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 VSVAIEE 7 VS+AIEE Sbjct: 515 VSIAIEE 521>XP_005273708 Length = 1032 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 VSVAIEE 7 VS+AIEE Sbjct: 229 VSIAIEE 235>XP_006716465 Length = 1826 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 VSVAIEE 7 VS+AIEE Sbjct: 515 VSIAIEE 521>XP_005273707 Length = 1847 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 VSVAIEE 7 VS+AIEE Sbjct: 515 VSIAIEE 521>XP_006712520 Length = 340 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VSVAIEEDL 9 +SVA+EE L Sbjct: 196 LSVAVEEGL 204>XP_005246534 Length = 453 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VSVAIEEDL 9 +SVA+EE L Sbjct: 309 LSVAVEEGL 317>NP_004251 Length = 1208 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 SVAIEED 8 +VA+EED Sbjct: 291 AVAVEED 297>NP_001460 Length = 609 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VSVAIEEDL 9 +S+A +EDL Sbjct: 221 ISIAEDEDL 229>NP_001275906 Length = 568 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VSVAIEEDL 9 +S+A +EDL Sbjct: 180 ISIAEDEDL 188>NP_001275905 Length = 609 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VSVAIEEDL 9 +S+A +EDL Sbjct: 221 ISIAEDEDL 229>NP_001275907 Length = 559 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VSVAIEEDL 9 +S+A +EDL Sbjct: 171 ISIAEDEDL 179>NP_036424 Length = 1136 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 SVAIEEDL 9 S+A+E+DL Sbjct: 341 SLALEQDL 348>NP_000258 Length = 2818 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 SVAIEEDL 9 ++A+EEDL Sbjct: 1709 TLALEEDL 1716>NP_001035957 Length = 2839 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 SVAIEEDL 9 ++A+EEDL Sbjct: 1730 TLALEEDL 1737>NP_001269264 Length = 1019 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 SVAIEEDL 9 S+A+E+DL Sbjct: 224 SLALEQDL 231>NP_001245257 Length = 1152 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 SVAIEEDL 9 S+A+E+DL Sbjct: 357 SLALEQDL 364>XP_006722776 Length = 1164 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 SVAIEEDL 9 S+A+E+DL Sbjct: 341 SLALEQDL 348>XP_006721990 Length = 2823 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 SVAIEEDL 9 ++A+EEDL Sbjct: 1740 TLALEEDL 1747>XP_006721989 Length = 2823 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 SVAIEEDL 9 ++A+EEDL Sbjct: 1740 TLALEEDL 1747>XP_005258041 Length = 2836 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 SVAIEEDL 9 ++A+EEDL Sbjct: 1709 TLALEEDL 1716>XP_006721988 Length = 2846 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 SVAIEEDL 9 ++A+EEDL Sbjct: 1719 TLALEEDL 1726>XP_006721987 Length = 2849 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 SVAIEEDL 9 ++A+EEDL Sbjct: 1740 TLALEEDL 1747>XP_006721986 Length = 2854 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 SVAIEEDL 9 ++A+EEDL Sbjct: 1727 TLALEEDL 1734>XP_005258040 Length = 2857 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 SVAIEEDL 9 ++A+EEDL Sbjct: 1730 TLALEEDL 1737>XP_006721985 Length = 2867 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 SVAIEEDL 9 ++A+EEDL Sbjct: 1740 TLALEEDL 1747Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.306 0.129 0.293 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 624,392 Number of extensions: 646 Number of successful extensions: 33 Number of sequences better than 10000.0: 33 Number of HSP's gapped: 33 Number of HSP's successfully gapped: 33 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.3 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |