Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_004251 19 869 NP_060733 17 2528 XP_006712103 17 2528 XP_006712102 17 2528 NP_005581 17 4312 NP_060718 17 4312 NP_001240781 16 5631 NP_006585 16 5631 NP_001240782 16 5631 NP_852607 16 5631 NP_689472 16 5631 XP_006721133 16 5631 XP_005255502 16 5631 XP_005255501 16 5631 XP_005270439 16 5631 XP_005270438 16 5631 NP_001121773 16 5631 NP_001121774 16 5631 NP_065157 16 5631 NP_061031 16 7355 NP_057726 16 7355 NP_001138985 16 7355 NP_055581 16 7355 NP_001273483 16 7355 NP_001138987 16 7355 NP_001138986 16 7355 NP_004177 16 7355 XP_005254495 16 7355 XP_005249975 16 7355 XP_006713353 16 7355 XP_005265438 16 7355 NP_001139241 15 9605 NP_004619 15 9605 NP_071881 15 9605 NP_006218 15 9605 NP_872617 15 9605 NP_001229849 15 9605 NP_588613 15 9605 NP_001034486 15 9605 NP_001008738 15 9605 NP_001229850 15 9605 XP_005260496 15 9605 XP_006721561 15 9605 XP_006712137 15 9605 XP_005264538 15 9605 XP_005264537 15 9605 XP_006712136 15 9605 XP_006710222 15 9605 XP_006710221 15 9605 XP_001717475 15 9605>NP_004251 Length = 1208 Score = 18.9 bits (37), Expect = 869 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 VRGRALRS 8 VRGRALRS Sbjct: 364 VRGRALRS 371>NP_060733 Length = 1435 Score = 17.3 bits (33), Expect = 2528 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 VRGRALRST 9 VRG+A+RS+ Sbjct: 1277 VRGKAIRSS 1285>XP_006712103 Length = 1175 Score = 17.3 bits (33), Expect = 2528 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 VRGRALRST 9 VRG+A+RS+ Sbjct: 1017 VRGKAIRSS 1025>XP_006712102 Length = 1313 Score = 17.3 bits (33), Expect = 2528 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 VRGRALRST 9 VRG+A+RS+ Sbjct: 1155 VRGKAIRSS 1163>NP_005581 Length = 680 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 RGRALRST 9 RGRA +ST Sbjct: 592 RGRAFKST 599>NP_060718 Length = 605 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 VRGRALRS 8 VRG ALRS Sbjct: 27 VRGSALRS 34>NP_001240781 Length = 739 Score = 16.2 bits (30), Expect = 5631 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 VRGRALRS 8 VRG ALRS Sbjct: 101 VRGLALRS 108>NP_006585 Length = 739 Score = 16.2 bits (30), Expect = 5631 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 VRGRALRS 8 VRG ALRS Sbjct: 101 VRGLALRS 108>NP_001240782 Length = 640 Score = 16.2 bits (30), Expect = 5631 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 VRGRALRS 8 VRG ALRS Sbjct: 2 VRGLALRS 9>NP_852607 Length = 622 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 VRGRALR 7 +RGRALR Sbjct: 391 MRGRALR 397>NP_689472 Length = 1910 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 RGRALRST 9 RGR LRS+ Sbjct: 623 RGRTLRSS 630>XP_006721133 Length = 122 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 VRGRALRS 8 +RGR LRS Sbjct: 95 LRGRGLRS 102>XP_005255502 Length = 122 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 VRGRALRS 8 +RGR LRS Sbjct: 95 LRGRGLRS 102>XP_005255501 Length = 122 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 VRGRALRS 8 +RGR LRS Sbjct: 95 LRGRGLRS 102>XP_005270439 Length = 405 Score = 16.2 bits (30), Expect = 5631 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 VRGRALRS 8 VRG ALRS Sbjct: 101 VRGLALRS 108>XP_005270438 Length = 635 Score = 16.2 bits (30), Expect = 5631 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 VRGRALRS 8 VRG ALRS Sbjct: 101 VRGLALRS 108>NP_001121773 Length = 122 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 VRGRALRS 8 +RGR LRS Sbjct: 95 LRGRGLRS 102>NP_001121774 Length = 122 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 VRGRALRS 8 +RGR LRS Sbjct: 95 LRGRGLRS 102>NP_065157 Length = 122 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 VRGRALRS 8 +RGR LRS Sbjct: 95 LRGRGLRS 102>NP_061031 Length = 640 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 RGRALRS 8 RGR LRS Sbjct: 113 RGRTLRS 119>NP_057726 Length = 3674 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 RGRALRST 9 RG ALR T Sbjct: 1829 RGHALRDT 1836>NP_001138985 Length = 414 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 RGRALRST 9 +GR LRST Sbjct: 364 QGRKLRST 371>NP_055581 Length = 414 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 RGRALRST 9 +GR LRST Sbjct: 364 QGRKLRST 371>NP_001273483 Length = 688 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 RGRALRS 8 RGR LRS Sbjct: 113 RGRTLRS 119>NP_001138987 Length = 346 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 RGRALRST 9 +GR LRST Sbjct: 296 QGRKLRST 303>NP_001138986 Length = 434 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 RGRALRST 9 +GR LRST Sbjct: 384 QGRKLRST 391>NP_004177 Length = 785 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 VRGRALRST 9 VRGR R+T Sbjct: 162 VRGRGSRAT 170>XP_005254495 Length = 3694 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 RGRALRST 9 RG ALR T Sbjct: 1849 RGHALRDT 1856>XP_005249975 Length = 414 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 RGRALRST 9 +GR LRST Sbjct: 364 QGRKLRST 371>XP_006713353 Length = 484 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 VRGRALRST 9 VRGR R+T Sbjct: 162 VRGRGSRAT 170>XP_005265438 Length = 785 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 VRGRALRST 9 VRGR R+T Sbjct: 162 VRGRGSRAT 170>NP_001139241 Length = 903 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 RGRALRS 8 RGR LRS Sbjct: 12 RGRELRS 18>NP_004619 Length = 940 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 RGRALRS 8 RGR LRS Sbjct: 12 RGRELRS 18>NP_071881 Length = 651 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 VRGRALR 7 V GRALR Sbjct: 115 VNGRALR 121>NP_006218 Length = 493 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 VRGRALRS 8 +RG+ALR+ Sbjct: 379 LRGKALRT 386>NP_872617 Length = 441 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 VRGRALRS 8 +RG+ALR+ Sbjct: 327 LRGKALRT 334>NP_001229849 Length = 398 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 VRGRALRS 8 +RG+ALR+ Sbjct: 284 LRGKALRT 291>NP_588613 Length = 1166 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 GRALRST 9 G+A+RST Sbjct: 719 GKAMRST 725>NP_001034486 Length = 210 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 VRGRAL 6 VRGRAL Sbjct: 106 VRGRAL 111>NP_001008738 Length = 1138 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 GRALRST 9 G+A+RST Sbjct: 691 GKAMRST 697>NP_001229850 Length = 405 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 VRGRALRS 8 +RG+ALR+ Sbjct: 291 LRGKALRT 298>XP_005260496 Length = 513 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 VRGRALRS 8 +RG+ALR+ Sbjct: 399 LRGKALRT 406>XP_006721561 Length = 374 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 VRGRAL 6 VRGRAL Sbjct: 200 VRGRAL 205>XP_006712137 Length = 339 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 VRGRALR 7 V GRALR Sbjct: 115 VNGRALR 121>XP_005264538 Length = 496 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 VRGRALR 7 V GRALR Sbjct: 115 VNGRALR 121>XP_005264537 Length = 558 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 VRGRALR 7 V GRALR Sbjct: 115 VNGRALR 121>XP_006712136 Length = 593 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 VRGRALR 7 V GRALR Sbjct: 115 VNGRALR 121>XP_006710222 Length = 1793 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 VRGRALRST 9 +RG LR+T Sbjct: 105 IRGNLLRAT 113>XP_006710221 Length = 1793 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 VRGRALRST 9 +RG LR+T Sbjct: 105 IRGNLLRAT 113>XP_001717475 Length = 1826 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 VRGRALRST 9 +RG LR+T Sbjct: 138 IRGNLLRAT 146Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.328 0.134 0.352 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 385,522 Number of extensions: 534 Number of successful extensions: 50 Number of sequences better than 10000.0: 50 Number of HSP's gapped: 50 Number of HSP's successfully gapped: 50 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.1 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |