Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_005091 17 2528 NP_653080 17 2528 XP_005267292 17 2528 XP_005267291 17 2528 XP_005267290 17 2528 NP_997275 17 3301 NP_001231776 17 3301 NP_004097 16 5631 NP_057336 16 7355 NP_525022 16 7355 NP_001275915 16 7355 NP_001275914 16 7355 NP_009099 16 7355 NP_525021 16 7355 XP_005256997 16 7355 XP_005256995 16 7355 XP_005256993 16 7355 XP_005256992 16 7355 XP_006721697 16 7355 XP_006721696 16 7355 XP_005256991 16 7355 XP_005266922 16 7355 XP_006712120 16 7355 XP_005264512 16 7355 XP_005264511 16 7355 XP_006712119 16 7355 XP_005264510 16 7355 XP_006712118 16 7355 XP_005264509 16 7355 XP_005264508 16 7355 XP_006712117 16 7355 XP_005264507 16 7355 XP_005264506 16 7355 NP_001025029 16 7355 NP_001013712 15 9605 XP_005268927 15 9605>NP_005091 Length = 1782 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VPAVVLLSE 9 VPAVV LSE Sbjct: 843 VPAVVPLSE 851>NP_653080 Length = 1684 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VPAVVLLSE 9 VPAVV LSE Sbjct: 745 VPAVVPLSE 753>XP_005267292 Length = 1677 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VPAVVLLSE 9 VPAVV LSE Sbjct: 738 VPAVVPLSE 746>XP_005267291 Length = 1684 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VPAVVLLSE 9 VPAVV LSE Sbjct: 745 VPAVVPLSE 753>XP_005267290 Length = 1782 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VPAVVLLSE 9 VPAVV LSE Sbjct: 843 VPAVVPLSE 851>NP_997275 Length = 99 Score = 16.9 bits (32), Expect = 3301 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 1 VPAVVLLS 8 +PAVVLLS Sbjct: 6 LPAVVLLS 13>NP_001231776 Length = 85 Score = 16.9 bits (32), Expect = 3301 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 1 VPAVVLLS 8 +PAVVLLS Sbjct: 6 LPAVVLLS 13>NP_004097 Length = 86 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 VPAVVLL 7 +PAVVLL Sbjct: 2 IPAVVLL 8>NP_057336 Length = 4857 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 VPAVVLLSE 9 +PA VLL E Sbjct: 3214 LPAAVLLKE 3222>NP_525022 Length = 1624 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 PAVVLLSE 9 P+VVLL E Sbjct: 1439 PSVVLLDE 1446>NP_001275915 Length = 1616 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 PAVVLLSE 9 P+VVLL E Sbjct: 1431 PSVVLLDE 1438>NP_001275914 Length = 1621 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 PAVVLLSE 9 P+VVLL E Sbjct: 1436 PSVVLLDE 1443>NP_009099 Length = 1581 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 PAVVLLSE 9 P+VVLL E Sbjct: 1396 PSVVLLDE 1403>NP_525021 Length = 1543 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 PAVVLLSE 9 P+VVLL E Sbjct: 1358 PSVVLLDE 1365>XP_005256997 Length = 1560 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 PAVVLLSE 9 P+VVLL E Sbjct: 1375 PSVVLLDE 1382>XP_005256995 Length = 1621 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 PAVVLLSE 9 P+VVLL E Sbjct: 1436 PSVVLLDE 1443>XP_005256993 Length = 1543 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 PAVVLLSE 9 P+VVLL E Sbjct: 1358 PSVVLLDE 1365>XP_005256992 Length = 1543 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 PAVVLLSE 9 P+VVLL E Sbjct: 1358 PSVVLLDE 1365>XP_006721697 Length = 1625 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 PAVVLLSE 9 P+VVLL E Sbjct: 1447 PSVVLLDE 1454>XP_006721696 Length = 1632 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 PAVVLLSE 9 P+VVLL E Sbjct: 1447 PSVVLLDE 1454>XP_005256991 Length = 1632 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 PAVVLLSE 9 P+VVLL E Sbjct: 1447 PSVVLLDE 1454>XP_005266922 Length = 408 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 VPAVVLLS 8 +P V+LLS Sbjct: 166 IPVVILLS 173>XP_006712120 Length = 4812 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 VPAVVLLSE 9 +PA VLL E Sbjct: 3169 LPAAVLLKE 3177>XP_005264512 Length = 4840 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 VPAVVLLSE 9 +PA VLL E Sbjct: 3197 LPAAVLLKE 3205>XP_005264511 Length = 4847 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 VPAVVLLSE 9 +PA VLL E Sbjct: 3241 LPAAVLLKE 3249>XP_006712119 Length = 4851 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 VPAVVLLSE 9 +PA VLL E Sbjct: 3208 LPAAVLLKE 3216>XP_005264510 Length = 4861 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 VPAVVLLSE 9 +PA VLL E Sbjct: 3218 LPAAVLLKE 3226>XP_006712118 Length = 4864 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 VPAVVLLSE 9 +PA VLL E Sbjct: 3241 LPAAVLLKE 3249>XP_005264509 Length = 4870 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 VPAVVLLSE 9 +PA VLL E Sbjct: 3227 LPAAVLLKE 3235>XP_005264508 Length = 4875 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 VPAVVLLSE 9 +PA VLL E Sbjct: 3232 LPAAVLLKE 3240>XP_006712117 Length = 4878 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 VPAVVLLSE 9 +PA VLL E Sbjct: 3235 LPAAVLLKE 3243>XP_005264507 Length = 4880 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 VPAVVLLSE 9 +PA VLL E Sbjct: 3237 LPAAVLLKE 3245>XP_005264506 Length = 4884 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 VPAVVLLSE 9 +PA VLL E Sbjct: 3241 LPAAVLLKE 3249>NP_001025029 Length = 408 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 VPAVVLLS 8 +P V+LLS Sbjct: 166 IPVVILLS 173>NP_001013712 Length = 653 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 PAVVLLSE 9 P+V+L+SE Sbjct: 485 PSVLLISE 492>XP_005268927 Length = 653 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 PAVVLLSE 9 P+V+L+SE Sbjct: 485 PSVLLISE 492Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.317 0.135 0.338 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 481,502 Number of extensions: 613 Number of successful extensions: 36 Number of sequences better than 10000.0: 36 Number of HSP's gapped: 36 Number of HSP's successfully gapped: 36 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.7 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |