Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_004251 19 869 NP_006022 17 4312 NP_056270 17 4312 XP_005261187 17 4312 XP_005261186 17 4312 XP_005261185 17 4312 XP_005261184 17 4312 XP_005261183 17 4312 XP_005261182 17 4312 XP_005261181 17 4312 XP_006714963 17 4312 XP_006714962 17 4312 XP_005266010 17 4312 NP_714921 16 5631 NP_115543 16 7355 XP_006721041 16 7355 XP_006721040 16 7355 XP_005255739 16 7355 NP_115758 15 9605 NP_001137282 15 9605 NP_001268451 15 9605 NP_001268449 15 9605 NP_877954 15 9605 NP_001268450 15 9605 NP_115874 15 9605 NP_542376 15 9605 NP_004361 15 9605 XP_005260916 15 9605 XP_006715397 15 9605>NP_004251 Length = 1208 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 VLVEFNELA 9 VLVEF+ELA Sbjct: 1026 VLVEFSELA 1034>NP_006022 Length = 3336 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 LVEFNELA 9 L EFNELA Sbjct: 1540 LDEFNELA 1547>NP_056270 Length = 557 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 VEFNELA 9 VEFN+LA Sbjct: 300 VEFNQLA 306>XP_005261187 Length = 2706 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 LVEFNELA 9 L EFNELA Sbjct: 1551 LDEFNELA 1558>XP_005261186 Length = 3139 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 LVEFNELA 9 L EFNELA Sbjct: 1422 LDEFNELA 1429>XP_005261185 Length = 3229 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 LVEFNELA 9 L EFNELA Sbjct: 1433 LDEFNELA 1440>XP_005261184 Length = 3258 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 LVEFNELA 9 L EFNELA Sbjct: 1551 LDEFNELA 1558>XP_005261183 Length = 3268 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 LVEFNELA 9 L EFNELA Sbjct: 1551 LDEFNELA 1558>XP_005261182 Length = 3346 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 LVEFNELA 9 L EFNELA Sbjct: 1550 LDEFNELA 1557>XP_005261181 Length = 3347 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 LVEFNELA 9 L EFNELA Sbjct: 1551 LDEFNELA 1558>XP_006714963 Length = 552 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 VEFNELA 9 VEFN+LA Sbjct: 295 VEFNQLA 301>XP_006714962 Length = 557 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 VEFNELA 9 VEFN+LA Sbjct: 300 VEFNQLA 306>XP_005266010 Length = 557 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 VEFNELA 9 VEFN+LA Sbjct: 300 VEFNQLA 306>NP_714921 Length = 680 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 VLVEFNELA 9 +++EFNEL+ Sbjct: 106 LVMEFNELS 114>NP_115543 Length = 813 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 LVEFNE 7 L+EFNE Sbjct: 602 LIEFNE 607>XP_006721041 Length = 680 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 LVEFNE 7 L+EFNE Sbjct: 469 LIEFNE 474>XP_006721040 Length = 661 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 LVEFNE 7 L+EFNE Sbjct: 450 LIEFNE 455>XP_005255739 Length = 823 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 LVEFNE 7 L+EFNE Sbjct: 612 LIEFNE 617>NP_115758 Length = 612 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 VLVEFNEL 8 +LV FN+L Sbjct: 442 ILVAFNDL 449>NP_001137282 Length = 329 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 VLVEFNEL 8 V VEFN+L Sbjct: 60 VSVEFNKL 67>NP_001268451 Length = 793 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 VLVEFNEL 8 +LV+F EL Sbjct: 121 ILVDFKEL 128>NP_001268449 Length = 840 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 VLVEFNEL 8 +LV+F EL Sbjct: 121 ILVDFKEL 128>NP_877954 Length = 824 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 VLVEFNEL 8 +LV+F EL Sbjct: 121 ILVDFKEL 128>NP_001268450 Length = 880 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 VLVEFNEL 8 +LV+F EL Sbjct: 121 ILVDFKEL 128>NP_115874 Length = 840 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 VLVEFNEL 8 +LV+F EL Sbjct: 121 ILVDFKEL 128>NP_542376 Length = 1899 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 VEFNELA 9 V++NELA Sbjct: 1299 VDYNELA 1305>NP_004361 Length = 3063 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 VEFNELA 9 V++NELA Sbjct: 2463 VDYNELA 2469>XP_005260916 Length = 581 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 VLVEFNEL 8 +LV+F EL Sbjct: 121 ILVDFKEL 128>XP_006715397 Length = 2972 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 VEFNELA 9 V++NELA Sbjct: 2372 VDYNELA 2378Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.323 0.142 0.355 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 442,840 Number of extensions: 538 Number of successful extensions: 29 Number of sequences better than 10000.0: 29 Number of HSP's gapped: 29 Number of HSP's successfully gapped: 29 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.9 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |