Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_001155973 19 665 NP_055903 19 665 NP_001001924 17 4312 NP_001001925 17 4312 XP_005273640 17 4312 XP_005273639 17 4312 XP_005273638 17 4312 XP_005273637 17 4312 XP_005273636 17 4312 XP_005273635 17 4312 XP_005273634 17 4312 NP_001004334 16 5631 NP_057063 16 7355 NP_004821 16 7355 NP_001257451 16 7355 NP_001257450 16 7355 NP_997198 16 7355 XP_006715675 16 7355 XP_005267280 16 7355 NP_079032 15 9605 NP_001264262 15 9605 XP_003959998 15 9605 XP_005270210 15 9605 XP_006718033 15 9605>NP_001155973 Length = 1833 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 VLQTILSRT 9 VLQT+LSRT Sbjct: 603 VLQTLLSRT 611>NP_055903 Length = 1723 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 VLQTILSRT 9 VLQT+LSRT Sbjct: 603 VLQTLLSRT 611>NP_001001924 Length = 1270 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 QTILSRT 9 QT+LSRT Sbjct: 550 QTVLSRT 556>NP_001001925 Length = 1216 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 QTILSRT 9 QT+LSRT Sbjct: 550 QTVLSRT 556>XP_005273640 Length = 969 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 QTILSRT 9 QT+LSRT Sbjct: 550 QTVLSRT 556>XP_005273639 Length = 1216 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 QTILSRT 9 QT+LSRT Sbjct: 550 QTVLSRT 556>XP_005273638 Length = 1228 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 QTILSRT 9 QT+LSRT Sbjct: 550 QTVLSRT 556>XP_005273637 Length = 1228 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 QTILSRT 9 QT+LSRT Sbjct: 550 QTVLSRT 556>XP_005273636 Length = 1270 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 QTILSRT 9 QT+LSRT Sbjct: 550 QTVLSRT 556>XP_005273635 Length = 1282 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 QTILSRT 9 QT+LSRT Sbjct: 550 QTVLSRT 556>XP_005273634 Length = 1282 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 QTILSRT 9 QT+LSRT Sbjct: 550 QTVLSRT 556>NP_001004334 Length = 2367 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 VLQTILSRT 9 VLQ LSRT Sbjct: 470 VLQLFLSRT 478>NP_057063 Length = 1365 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VLQTILSRT 9 +LQTI+S T Sbjct: 721 ILQTIMSFT 729>NP_004821 Length = 1368 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VLQTILSRT 9 +LQTI+S T Sbjct: 715 ILQTIMSFT 723>NP_001257451 Length = 1364 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VLQTILSRT 9 +LQTI+S T Sbjct: 715 ILQTIMSFT 723>NP_001257450 Length = 1359 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VLQTILSRT 9 +LQTI+S T Sbjct: 715 ILQTIMSFT 723>NP_997198 Length = 449 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 VLQTILS 7 VLQT+LS Sbjct: 434 VLQTVLS 440>XP_006715675 Length = 747 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VLQTILSRT 9 +LQTI+S T Sbjct: 721 ILQTIMSFT 729>XP_005267280 Length = 1374 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VLQTILSRT 9 +LQTI+S T Sbjct: 721 ILQTIMSFT 729>NP_079032 Length = 949 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 LQTILSR 8 LQT+LSR Sbjct: 773 LQTMLSR 779>NP_001264262 Length = 917 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 VLQTILSRT 9 VLQ +LS T Sbjct: 455 VLQKVLSET 463>XP_003959998 Length = 639 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 VLQTILSRT 9 VLQ +LS T Sbjct: 177 VLQKVLSET 185>XP_005270210 Length = 888 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 LQTILSR 8 LQT+LSR Sbjct: 712 LQTMLSR 718>XP_006718033 Length = 888 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 LQTILSR 8 LQT+LSR Sbjct: 712 LQTMLSR 718Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.327 0.133 0.312 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 294,423 Number of extensions: 548 Number of successful extensions: 24 Number of sequences better than 10000.0: 24 Number of HSP's gapped: 24 Number of HSP's successfully gapped: 24 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.1 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |