Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value XP_005255186 18 1935 NP_777563 18 1935 NP_056207 17 4312 NP_000672 16 5631 NP_002746 16 7355 NP_001019626 16 7355 NP_689838 16 7355 NP_001138573 16 7355 XP_005254598 16 7355 XP_006718727 16 7355 XP_006717976 16 7355 XP_005270022 16 7355 XP_003403748 16 7355 NP_001129595 16 7355 NP_060591 16 7355 NP_619635 16 7355 NP_001139784 15 9605 NP_705832 15 9605 NP_001269667 15 9605 NP_653309 15 9605 NP_001269668 15 9605 NP_001269670 15 9605 NP_078848 15 9605 NP_001240755 15 9605 NP_001269669 15 9605 NP_001269671 15 9605 NP_110385 15 9605 XP_005262370 15 9605 XP_005262369 15 9605 XP_006724779 15 9605 XP_006724272 15 9605 XP_006724271 15 9605 XP_006724270 15 9605 XP_006724269 15 9605 XP_006724268 15 9605 XP_006724267 15 9605 XP_005256920 15 9605 NP_115664 15 9605 NP_001011537 15 9605 NP_443189 15 9605 NP_000979 15 9605>XP_005255186 Length = 254 Score = 17.7 bits (34), Expect = 1935 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 VLKRKARVP 9 VLKR AR+P Sbjct: 35 VLKRPARLP 43>NP_777563 Length = 245 Score = 17.7 bits (34), Expect = 1935 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 VLKRKARVP 9 VLKR AR+P Sbjct: 26 VLKRPARLP 34>NP_056207 Length = 325 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LKRKARVP 9 LKR+AR P Sbjct: 50 LKRRARCP 57>NP_000672 Length = 465 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 VLKRKARVP 9 + KR+ RVP Sbjct: 237 IAKRRTRVP 245>NP_002746 Length = 393 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 VLKRKARVP 9 VLK+ R+P Sbjct: 154 VLKKAGRIP 162>NP_001019626 Length = 569 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 LKRKARVP 9 ++RK RVP Sbjct: 307 IERKVRVP 314>NP_689838 Length = 744 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 KRKARVP 9 KR+A+VP Sbjct: 596 KRRAKVP 602>NP_001138573 Length = 712 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 VLKRKAR 7 +LKRKAR Sbjct: 206 LLKRKAR 212>XP_005254598 Length = 284 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 VLKRKARVP 9 VLK+ R+P Sbjct: 154 VLKKAGRIP 162>XP_006718727 Length = 712 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 VLKRKAR 7 +LKRKAR Sbjct: 206 LLKRKAR 212>XP_006717976 Length = 1147 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 VLKRKARVP 9 VLK+KA P Sbjct: 1061 VLKKKAEQP 1069>XP_005270022 Length = 1172 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 VLKRKARVP 9 VLK+KA P Sbjct: 1060 VLKKKAEQP 1068>XP_003403748 Length = 997 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VLKRKARVP 9 +L+R+AR P Sbjct: 84 LLRREARAP 92>NP_001129595 Length = 1186 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 VLKRKARVP 9 VLK+KA P Sbjct: 1061 VLKKKAEQP 1069>NP_060591 Length = 1173 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 VLKRKARVP 9 VLK+KA P Sbjct: 1061 VLKKKAEQP 1069>NP_619635 Length = 1043 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VLKRKARVP 9 +L+R+AR P Sbjct: 130 LLRREARAP 138>NP_001139784 Length = 986 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 LKRKAR 7 LKRKAR Sbjct: 64 LKRKAR 69>NP_705832 Length = 938 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 LKRKAR 7 LKRKAR Sbjct: 64 LKRKAR 69>NP_001269667 Length = 750 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 7/8 (87%) Query: 2 LKRKARVP 9 +KR+ R+P Sbjct: 341 VKRRVRIP 348>NP_653309 Length = 1434 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 LKRKARVP 9 LK+K +VP Sbjct: 329 LKKKMKVP 336>NP_001269668 Length = 915 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 7/8 (87%) Query: 2 LKRKARVP 9 +KR+ R+P Sbjct: 506 VKRRVRIP 513>NP_001269670 Length = 659 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 7/8 (87%) Query: 2 LKRKARVP 9 +KR+ R+P Sbjct: 249 VKRRVRIP 256>NP_078848 Length = 552 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 6/9 (66%) Query: 1 VLKRKARVP 9 V KRK VP Sbjct: 26 VTKRKLEVP 34>NP_001240755 Length = 557 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 6/9 (66%) Query: 1 VLKRKARVP 9 V KRK VP Sbjct: 26 VTKRKLEVP 34>NP_001269669 Length = 549 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 7/8 (87%) Query: 2 LKRKARVP 9 +KR+ R+P Sbjct: 140 VKRRVRIP 147>NP_001269671 Length = 460 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 7/8 (87%) Query: 2 LKRKARVP 9 +KR+ R+P Sbjct: 51 VKRRVRIP 58>NP_110385 Length = 916 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 7/8 (87%) Query: 2 LKRKARVP 9 +KR+ R+P Sbjct: 507 VKRRVRIP 514>XP_005262370 Length = 664 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 6/9 (66%) Query: 1 VLKRKARVP 9 V KRK R P Sbjct: 456 VEKRKTRTP 464>XP_005262369 Length = 664 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 6/9 (66%) Query: 1 VLKRKARVP 9 V KRK R P Sbjct: 456 VEKRKTRTP 464>XP_006724779 Length = 691 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 6/9 (66%) Query: 1 VLKRKARVP 9 V KRK R P Sbjct: 483 VEKRKTRTP 491>XP_006724272 Length = 550 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 7/8 (87%) Query: 2 LKRKARVP 9 +KR+ R+P Sbjct: 141 VKRRVRIP 148>XP_006724271 Length = 461 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 7/8 (87%) Query: 2 LKRKARVP 9 +KR+ R+P Sbjct: 52 VKRRVRIP 59>XP_006724270 Length = 550 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 7/8 (87%) Query: 2 LKRKARVP 9 +KR+ R+P Sbjct: 141 VKRRVRIP 148>XP_006724269 Length = 639 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 7/8 (87%) Query: 2 LKRKARVP 9 +KR+ R+P Sbjct: 230 VKRRVRIP 237>XP_006724268 Length = 742 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 7/8 (87%) Query: 2 LKRKARVP 9 +KR+ R+P Sbjct: 333 VKRRVRIP 340>XP_006724267 Length = 743 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 7/8 (87%) Query: 2 LKRKARVP 9 +KR+ R+P Sbjct: 334 VKRRVRIP 341>XP_005256920 Length = 943 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 LKRKAR 7 LKRKAR Sbjct: 64 LKRKAR 69>NP_115664 Length = 318 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 VLKRKARV 8 VLKRKA + Sbjct: 136 VLKRKANL 143>NP_001011537 Length = 292 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 VLKRKARV 8 VLKRKA + Sbjct: 110 VLKRKANL 117>NP_443189 Length = 691 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 6/9 (66%) Query: 1 VLKRKARVP 9 V KRK R P Sbjct: 483 VEKRKTRTP 491>NP_000979 Length = 136 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 LKRKAR 7 LKRKAR Sbjct: 106 LKRKAR 111Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.328 0.139 0.382 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 459,374 Number of extensions: 797 Number of successful extensions: 41 Number of sequences better than 10000.0: 41 Number of HSP's gapped: 41 Number of HSP's successfully gapped: 41 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.1 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |