Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_006209 19 665 XP_006713721 19 665 NP_001135780 17 2528 NP_005259 17 3301 XP_005270808 17 3301 NP_001010853 17 4312 XP_005248719 17 4312 XP_005248718 17 4312 NP_060426 17 4312 NP_085153 16 5631 XP_005246937 16 5631 XP_005246936 16 5631 XP_005246935 16 5631 XP_006712846 16 5631 XP_005260474 16 7355 NP_057088 16 7355 NP_667339 16 7355 NP_065681 15 9605 NP_066124 15 9605 NP_001766 15 9605 NP_000365 15 9605 NP_001010870 15 9605 NP_001161831 15 9605 NP_001275680 15 9605 NP_001275679 15 9605 NP_110397 15 9605 XP_006726414 15 9605 XP_006718986 15 9605 XP_006718985 15 9605 XP_006717999 15 9605 XP_006712839 15 9605 XP_006711762 15 9605 XP_005271227 15 9605 XP_005271226 15 9605 NP_079423 15 9605>NP_006209 Length = 1068 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VISKRAQEC 9 VISK AQEC Sbjct: 963 VISKGAQEC 971>XP_006713721 Length = 1068 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VISKRAQEC 9 VISK AQEC Sbjct: 963 VISKGAQEC 971>NP_001135780 Length = 2156 Score = 17.3 bits (33), Expect = 2528 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VISKRAQEC 9 VISKR++ C Sbjct: 1374 VISKRSKNC 1382>NP_005259 Length = 273 Score = 16.9 bits (32), Expect = 3301 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 VISKRAQEC 9 ++SKR EC Sbjct: 208 LVSKRCHEC 216>XP_005270808 Length = 273 Score = 16.9 bits (32), Expect = 3301 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 VISKRAQEC 9 ++SKR EC Sbjct: 208 LVSKRCHEC 216>NP_001010853 Length = 436 Score = 16.5 bits (31), Expect = 4312 Identities = 4/9 (44%), Positives = 9/9 (100%) Query: 1 VISKRAQEC 9 V++K+A++C Sbjct: 285 VLTKKAEDC 293>XP_005248719 Length = 250 Score = 16.5 bits (31), Expect = 4312 Identities = 4/9 (44%), Positives = 9/9 (100%) Query: 1 VISKRAQEC 9 V++K+A++C Sbjct: 99 VLTKKAEDC 107>XP_005248718 Length = 250 Score = 16.5 bits (31), Expect = 4312 Identities = 4/9 (44%), Positives = 9/9 (100%) Query: 1 VISKRAQEC 9 V++K+A++C Sbjct: 99 VLTKKAEDC 107>NP_060426 Length = 448 Score = 16.5 bits (31), Expect = 4312 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 VISKRAQEC 9 V SKRAQ C Sbjct: 93 VPSKRAQGC 101>NP_085153 Length = 428 Score = 16.2 bits (30), Expect = 5631 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 SKRAQEC 9 SK+A+EC Sbjct: 143 SKKAKEC 149>XP_005246937 Length = 310 Score = 16.2 bits (30), Expect = 5631 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 SKRAQEC 9 SK+A+EC Sbjct: 25 SKKAKEC 31>XP_005246936 Length = 353 Score = 16.2 bits (30), Expect = 5631 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 SKRAQEC 9 SK+A+EC Sbjct: 68 SKKAKEC 74>XP_005246935 Length = 381 Score = 16.2 bits (30), Expect = 5631 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 SKRAQEC 9 SK+A+EC Sbjct: 143 SKKAKEC 149>XP_006712846 Length = 428 Score = 16.2 bits (30), Expect = 5631 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 SKRAQEC 9 SK+A+EC Sbjct: 143 SKKAKEC 149>XP_005260474 Length = 437 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 ISKRAQEC 9 +SKR +EC Sbjct: 269 LSKRNREC 276>NP_057088 Length = 437 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 ISKRAQEC 9 +SKR +EC Sbjct: 269 LSKRNREC 276>NP_667339 Length = 242 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 VISKRAQEC 9 V+SK A EC Sbjct: 191 VLSKDAGEC 199>NP_065681 Length = 1072 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 2 ISKRAQEC 9 +SKR EC Sbjct: 521 VSKRRLEC 528>NP_066124 Length = 1114 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 2 ISKRAQEC 9 +SKR EC Sbjct: 521 VSKRRLEC 528>NP_001766 Length = 300 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 ISKRAQEC 9 +S+RAQ C Sbjct: 18 LSRRAQLC 25>NP_000365 Length = 367 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 VISKRAQEC 9 V K+A+EC Sbjct: 286 VAPKKAREC 294>NP_001010870 Length = 2096 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 VISKRAQE 8 V+S++AQE Sbjct: 86 VVSRQAQE 93>NP_001161831 Length = 2066 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 VISKRAQE 8 V+S++AQE Sbjct: 86 VVSRQAQE 93>NP_001275680 Length = 448 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 6/9 (66%) Query: 1 VISKRAQEC 9 V+S R EC Sbjct: 192 VVSLRCSEC 200>NP_001275679 Length = 413 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 6/9 (66%) Query: 1 VISKRAQEC 9 V+S R EC Sbjct: 157 VVSLRCSEC 165>NP_110397 Length = 457 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 6/9 (66%) Query: 1 VISKRAQEC 9 V+S R EC Sbjct: 201 VVSLRCSEC 209>XP_006726414 Length = 157 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 6/9 (66%) Query: 1 VISKRAQEC 9 V+S QEC Sbjct: 147 VVSAATQEC 155>XP_006718986 Length = 456 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 6/9 (66%) Query: 1 VISKRAQEC 9 V+S R EC Sbjct: 192 VVSLRCSEC 200>XP_006718985 Length = 465 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 6/9 (66%) Query: 1 VISKRAQEC 9 V+S R EC Sbjct: 201 VVSLRCSEC 209>XP_006717999 Length = 1207 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 2 ISKRAQEC 9 +SKR EC Sbjct: 614 VSKRRLEC 621>XP_006712839 Length = 210 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 VISKRAQEC 9 VISKR+ C Sbjct: 85 VISKRSGYC 93>XP_006711762 Length = 157 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 6/9 (66%) Query: 1 VISKRAQEC 9 V+S QEC Sbjct: 147 VVSAATQEC 155>XP_005271227 Length = 295 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 VISKRAQEC 9 V K+A+EC Sbjct: 214 VAPKKAREC 222>XP_005271226 Length = 295 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 VISKRAQEC 9 V K+A+EC Sbjct: 214 VAPKKAREC 222>NP_079423 Length = 238 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 VISKRAQEC 9 VISKR+ C Sbjct: 113 VISKRSGYC 121Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.322 0.125 0.355 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 459,253 Number of extensions: 718 Number of successful extensions: 35 Number of sequences better than 10000.0: 35 Number of HSP's gapped: 35 Number of HSP's successfully gapped: 35 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.0 bits) S2: 28 (15.4 bits)
|
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |