Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_003473 19 665 NP_733751 19 665 XP_006719679 19 665 XP_005269219 19 665 XP_006719678 19 665 XP_006719677 19 665 XP_006716142 19 665 XP_005250088 19 665 XP_006716141 19 665 XP_005250085 19 665 XP_006716140 19 665 XP_005250084 19 665 XP_005250083 19 665 XP_005250082 19 665 NP_005423 17 2528 NP_001093589 17 2528 NP_001093588 17 2528 XP_005268103 17 2528 NP_653267 17 4312 NP_079514 17 4312 NP_001011885 17 4312 NP_060267 17 4312 XP_006720636 17 4312 NP_056091 16 5631 NP_958443 16 5631 NP_004938 16 5631 NP_114408 16 5631 NP_055520 16 5631 NP_001152758 16 5631 NP_001138545 16 5631 XP_005262050 16 5631 XP_005262049 16 5631 XP_005256632 16 5631 XP_006716252 16 5631 XP_006716251 16 5631 XP_006713073 16 5631 XP_005264975 16 5631 XP_006713072 16 5631 XP_006713071 16 5631 XP_005264974 16 5631 XP_005264973 16 5631 XP_005264972 16 5631 XP_005264971 16 5631 NP_000724 16 7355 NP_005036 16 7355 NP_774959 16 7355 NP_001156 16 7355 NP_892007 16 7355 NP_001161354 16 7355 NP_065070 16 7355 NP_079010 15 9605 NP_001847 15 9605 XP_006720319 15 9605 XP_005270538 15 9605>NP_003473 Length = 5537 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VIDAMLTGG 9 VIDA LTGG Sbjct: 5460 VIDATLTGG 5468>NP_733751 Length = 4911 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VIDAMLTGG 9 VIDA LTGG Sbjct: 4834 VIDATLTGG 4842>XP_006719679 Length = 5536 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VIDAMLTGG 9 VIDA LTGG Sbjct: 5459 VIDATLTGG 5467>XP_005269219 Length = 5537 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VIDAMLTGG 9 VIDA LTGG Sbjct: 5460 VIDATLTGG 5468>XP_006719678 Length = 5539 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VIDAMLTGG 9 VIDA LTGG Sbjct: 5462 VIDATLTGG 5470>XP_006719677 Length = 5540 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VIDAMLTGG 9 VIDA LTGG Sbjct: 5463 VIDATLTGG 5471>XP_006716142 Length = 4927 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VIDAMLTGG 9 VIDA LTGG Sbjct: 4850 VIDATLTGG 4858>XP_005250088 Length = 4928 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VIDAMLTGG 9 VIDA LTGG Sbjct: 4851 VIDATLTGG 4859>XP_006716141 Length = 4959 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VIDAMLTGG 9 VIDA LTGG Sbjct: 4882 VIDATLTGG 4890>XP_005250085 Length = 4979 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VIDAMLTGG 9 VIDA LTGG Sbjct: 4902 VIDATLTGG 4910>XP_006716140 Length = 4982 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VIDAMLTGG 9 VIDA LTGG Sbjct: 4905 VIDATLTGG 4913>XP_005250084 Length = 4982 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VIDAMLTGG 9 VIDA LTGG Sbjct: 4905 VIDATLTGG 4913>XP_005250083 Length = 4982 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VIDAMLTGG 9 VIDA LTGG Sbjct: 4905 VIDATLTGG 4913>XP_005250082 Length = 4983 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VIDAMLTGG 9 VIDA LTGG Sbjct: 4906 VIDATLTGG 4914>NP_005423 Length = 346 Score = 17.3 bits (33), Expect = 2528 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VIDAMLTGG 9 V+DA+L GG Sbjct: 88 VLDALLRGG 96>NP_001093589 Length = 346 Score = 17.3 bits (33), Expect = 2528 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VIDAMLTGG 9 V+DA+L GG Sbjct: 88 VLDALLRGG 96>NP_001093588 Length = 346 Score = 17.3 bits (33), Expect = 2528 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VIDAMLTGG 9 V+DA+L GG Sbjct: 88 VLDALLRGG 96>XP_005268103 Length = 346 Score = 17.3 bits (33), Expect = 2528 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VIDAMLTGG 9 V+DA+L GG Sbjct: 88 VLDALLRGG 96>NP_653267 Length = 4753 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VIDAMLTGG 9 V+D +L+GG Sbjct: 2373 VVDLLLSGG 2381>NP_079514 Length = 482 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 6/9 (66%) Query: 1 VIDAMLTGG 9 V DAM GG Sbjct: 103 VFDAMFNGG 111>NP_001011885 Length = 385 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 6/9 (66%) Query: 1 VIDAMLTGG 9 V DAM GG Sbjct: 103 VFDAMFNGG 111>NP_060267 Length = 525 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 6/9 (66%) Query: 1 VIDAMLTGG 9 V DAM GG Sbjct: 145 VFDAMFNGG 153>XP_006720636 Length = 354 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 6/9 (66%) Query: 1 VIDAMLTGG 9 V DAM GG Sbjct: 103 VFDAMFNGG 111>NP_056091 Length = 525 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 VIDAMLTGG 9 +ID + TGG Sbjct: 296 IIDQIFTGG 304>NP_958443 Length = 711 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 VIDAMLTGG 9 +ID + TGG Sbjct: 483 IIDQIFTGG 491>NP_004938 Length = 2030 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 VIDAMLTGG 9 VIDA + GG Sbjct: 1547 VIDAAVNGG 1555>NP_114408 Length = 669 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 VIDAMLTG 8 ++DA+LTG Sbjct: 113 LVDAVLTG 120>NP_055520 Length = 1966 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 VIDAMLTGG 9 VIDA + GG Sbjct: 1508 VIDAAVNGG 1516>NP_001152758 Length = 649 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 VIDAMLTG 8 ++DA+LTG Sbjct: 113 LVDAVLTG 120>NP_001138545 Length = 438 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 VIDAMLTGG 9 +ID + TGG Sbjct: 198 IIDQIFTGG 206>XP_005262050 Length = 470 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 VIDAMLTGG 9 +ID + TGG Sbjct: 242 IIDQIFTGG 250>XP_005262049 Length = 711 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 VIDAMLTGG 9 +ID + TGG Sbjct: 483 IIDQIFTGG 491>XP_005256632 Length = 420 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 VIDAMLTGG 9 +ID + TGG Sbjct: 191 IIDQIFTGG 199>XP_006716252 Length = 1937 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 VIDAMLTGG 9 VIDA + GG Sbjct: 1517 VIDAAVNGG 1525>XP_006716251 Length = 1975 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 VIDAMLTGG 9 VIDA + GG Sbjct: 1517 VIDAAVNGG 1525>XP_006713073 Length = 1869 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 VIDAMLTGG 9 VIDA + GG Sbjct: 1547 VIDAAVNGG 1555>XP_005264975 Length = 2022 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 VIDAMLTGG 9 VIDA + GG Sbjct: 1498 VIDAAVNGG 1506>XP_006713072 Length = 2042 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 VIDAMLTGG 9 VIDA + GG Sbjct: 1518 VIDAAVNGG 1526>XP_006713071 Length = 2050 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 VIDAMLTGG 9 VIDA + GG Sbjct: 1547 VIDAAVNGG 1555>XP_005264974 Length = 2057 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 VIDAMLTGG 9 VIDA + GG Sbjct: 1533 VIDAAVNGG 1541>XP_005264973 Length = 2062 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 VIDAMLTGG 9 VIDA + GG Sbjct: 1538 VIDAAVNGG 1546>XP_005264972 Length = 2065 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 VIDAMLTGG 9 VIDA + GG Sbjct: 1547 VIDAAVNGG 1555>XP_005264971 Length = 2071 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 VIDAMLTGG 9 VIDA + GG Sbjct: 1547 VIDAAVNGG 1555>NP_000724 Length = 207 Score = 15.8 bits (29), Expect = 7355 Identities = 4/9 (44%), Positives = 7/9 (77%) Query: 1 VIDAMLTGG 9 ++D +TGG Sbjct: 135 IVDICITGG 143>NP_005036 Length = 3460 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 VIDAMLTGG 9 VID +L GG Sbjct: 2307 VIDQILIGG 2315>NP_774959 Length = 3458 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 VIDAMLTGG 9 VID +L GG Sbjct: 2307 VIDQILIGG 2315>NP_001156 Length = 604 Score = 15.8 bits (29), Expect = 7355 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 VIDAMLTGG 9 ++D++LT G Sbjct: 464 ILDSLLTAG 472>NP_892007 Length = 604 Score = 15.8 bits (29), Expect = 7355 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 VIDAMLTGG 9 ++D++LT G Sbjct: 464 ILDSLLTAG 472>NP_001161354 Length = 1250 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 VIDAMLTGG 9 V+D +L GG Sbjct: 584 VVDLLLEGG 592>NP_065070 Length = 1429 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 VIDAMLTGG 9 V+D +L GG Sbjct: 763 VVDLLLEGG 771>NP_079010 Length = 1002 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 VIDAMLTGG 9 +ID +L GG Sbjct: 383 IIDQVLQGG 391>NP_001847 Length = 1604 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 2 IDAMLTG 8 +DA LTG Sbjct: 289 VDAQLTG 295>XP_006720319 Length = 1004 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 VIDAMLTGG 9 +ID +L GG Sbjct: 383 IIDQVLQGG 391>XP_005270538 Length = 1588 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 2 IDAMLTG 8 +DA LTG Sbjct: 289 VDAQLTG 295Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.323 0.145 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 500,728 Number of extensions: 757 Number of successful extensions: 54 Number of sequences better than 10000.0: 54 Number of HSP's gapped: 54 Number of HSP's successfully gapped: 54 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.8 bits) S2: 28 (15.4 bits)
|
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |