Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_004295 19 665 XP_005271879 17 2528 NP_000693 17 4312 NP_036270 17 4312 NP_060862 17 4312 XP_005263172 17 4312 NP_001074003 16 5631 XP_005254452 16 5631 XP_005254451 16 5631 NP_056342 16 7355 NP_001096065 16 7355 NP_001096064 16 7355 NP_065943 16 7355 XP_005250192 16 7355 XP_005250189 16 7355 XP_005250188 16 7355 XP_006715909 16 7355 NP_001253989 15 9605 NP_001253990 15 9605 NP_001253988 15 9605 NP_055563 15 9605 NP_001269461 15 9605 NP_056154 15 9605 NP_001269460 15 9605 NP_056042 15 9605 NP_598368 15 9605 NP_001092108 15 9605 NP_115548 15 9605 NP_852107 15 9605 NP_001010844 15 9605 XP_006724046 15 9605 XP_006724045 15 9605 XP_006724044 15 9605 XP_006723822 15 9605 XP_005249939 15 9605 XP_006715854 15 9605 XP_006715853 15 9605 XP_006715400 15 9605 XP_005248711 15 9605 XP_006715399 15 9605 XP_006712217 15 9605 NP_443199 15 9605>NP_004295 Length = 1620 Score = 19.2 bits (38), Expect = 665 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 GSVRKLRR 9 GSVRKLRR Sbjct: 130 GSVRKLRR 137>XP_005271879 Length = 277 Score = 17.3 bits (33), Expect = 2528 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 VGSVRKLRR 9 VGS+RK RR Sbjct: 16 VGSLRKQRR 24>NP_000693 Length = 1020 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 GSVRKLR 8 GSVRK+R Sbjct: 463 GSVRKMR 469>NP_036270 Length = 560 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 VGSVRKL 7 VGS+RKL Sbjct: 53 VGSIRKL 59>NP_060862 Length = 2104 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VGSVRKLRR 9 VGSVRK+ + Sbjct: 1719 VGSVRKIAK 1727>XP_005263172 Length = 2104 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VGSVRKLRR 9 VGSVRK+ + Sbjct: 1719 VGSVRKIAK 1727>NP_001074003 Length = 2214 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 VGSVRKLRR 9 +G++RKLR+ Sbjct: 178 LGALRKLRK 186>XP_005254452 Length = 2188 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 VGSVRKLRR 9 +G++RKLR+ Sbjct: 178 LGALRKLRK 186>XP_005254451 Length = 2214 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 VGSVRKLRR 9 +G++RKLR+ Sbjct: 178 LGALRKLRK 186>NP_056342 Length = 808 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 VGSVRKLR 8 +GSV KLR Sbjct: 564 LGSVEKLR 571>NP_001096065 Length = 622 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 GSVRKLRR 9 GSV++LR+ Sbjct: 372 GSVKRLRK 379>NP_001096064 Length = 622 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 GSVRKLRR 9 GSV++LR+ Sbjct: 372 GSVKRLRK 379>NP_065943 Length = 622 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 GSVRKLRR 9 GSV++LR+ Sbjct: 372 GSVKRLRK 379>XP_005250192 Length = 568 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 GSVRKLRR 9 GSV++LR+ Sbjct: 372 GSVKRLRK 379>XP_005250189 Length = 622 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 GSVRKLRR 9 GSV++LR+ Sbjct: 372 GSVKRLRK 379>XP_005250188 Length = 622 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 GSVRKLRR 9 GSV++LR+ Sbjct: 372 GSVKRLRK 379>XP_006715909 Length = 622 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 GSVRKLRR 9 GSV++LR+ Sbjct: 372 GSVKRLRK 379>NP_001253989 Length = 445 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 GSVRKLRR 9 GS+RK+ R Sbjct: 365 GSIRKMLR 372>NP_001253990 Length = 450 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 GSVRKLRR 9 GS+RK+ R Sbjct: 370 GSIRKMLR 377>NP_001253988 Length = 458 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 GSVRKLRR 9 GS+RK+ R Sbjct: 378 GSIRKMLR 385>NP_055563 Length = 470 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 GSVRKLRR 9 GS+RK+ R Sbjct: 390 GSIRKMLR 397>NP_001269461 Length = 1102 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VGSVRKLRR 9 +GS+RK R+ Sbjct: 9 LGSLRKARK 17>NP_056154 Length = 1102 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VGSVRKLRR 9 +GS+RK R+ Sbjct: 9 LGSLRKARK 17>NP_001269460 Length = 1102 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VGSVRKLRR 9 +GS+RK R+ Sbjct: 9 LGSLRKARK 17>NP_056042 Length = 424 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 GSVRKLR 8 G+VRK+R Sbjct: 311 GAVRKIR 317>NP_598368 Length = 429 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 GSVRKLR 8 G+VRK+R Sbjct: 311 GAVRKIR 317>NP_001092108 Length = 708 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 GSVRKLRR 9 GS++KLR+ Sbjct: 635 GSLKKLRQ 642>NP_115548 Length = 1316 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VGSVRKLRR 9 +GS+RK+ R Sbjct: 942 IGSLRKVDR 950>NP_852107 Length = 1102 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VGSVRKLRR 9 +GS+RK R+ Sbjct: 9 LGSLRKARK 17>NP_001010844 Length = 260 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 GSVRKLRR 9 GSV LRR Sbjct: 165 GSVENLRR 172>XP_006724046 Length = 304 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 GSVRKLR 8 G+VRK+R Sbjct: 186 GAVRKIR 192>XP_006724045 Length = 321 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 GSVRKLR 8 G+VRK+R Sbjct: 203 GAVRKIR 209>XP_006724044 Length = 449 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 GSVRKLR 8 G+VRK+R Sbjct: 331 GAVRKIR 337>XP_006723822 Length = 1111 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VGSVRKLRR 9 +GS+RK R+ Sbjct: 18 LGSLRKARK 26>XP_005249939 Length = 1324 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VGSVRKLRR 9 +GS+RK+ R Sbjct: 942 IGSLRKVDR 950>XP_006715854 Length = 1327 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VGSVRKLRR 9 +GS+RK+ R Sbjct: 942 IGSLRKVDR 950>XP_006715853 Length = 1327 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VGSVRKLRR 9 +GS+RK+ R Sbjct: 942 IGSLRKVDR 950>XP_006715400 Length = 156 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 GSVRKLRR 9 GSV LRR Sbjct: 42 GSVENLRR 49>XP_005248711 Length = 192 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 GSVRKLRR 9 GSV LRR Sbjct: 78 GSVENLRR 85>XP_006715399 Length = 279 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 GSVRKLRR 9 GSV LRR Sbjct: 165 GSVENLRR 172>XP_006712217 Length = 256 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 GSVRKLRR 9 GS+RK+ R Sbjct: 176 GSIRKMLR 183>NP_443199 Length = 378 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 VGSVRKLR 8 VGS+RK R Sbjct: 317 VGSLRKKR 324Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.331 0.144 0.378 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 468,895 Number of extensions: 744 Number of successful extensions: 42 Number of sequences better than 10000.0: 42 Number of HSP's gapped: 42 Number of HSP's successfully gapped: 42 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.2 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |