Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_005219 18 1482 NP_001276866 18 1935 NP_004439 18 1935 NP_001276865 18 1935 NP_001005862 18 1935 XP_005257197 18 1935 XP_006721828 18 1935 NP_001036064 17 2528 NP_005226 17 2528 XP_005246434 17 2528 XP_005246433 17 2528 XP_005246432 17 2528 XP_006712427 17 2528 XP_006718462 16 7355 XP_006710008 16 7355 NP_004658 15 9605 XP_005257794 15 9605 XP_006720790 15 9605 XP_005268334 15 9605 XP_005268333 15 9605 XP_006720789 15 9605 NP_115752 15 9605>NP_005219 Length = 1210 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TVQLIMQLM 9 TVQLI QLM Sbjct: 785 TVQLITQLM 793>NP_001276866 Length = 1055 Score = 17.7 bits (34), Expect = 1935 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 TVQLIMQLM 9 TVQL+ QLM Sbjct: 793 TVQLVTQLM 801>NP_004439 Length = 1255 Score = 17.7 bits (34), Expect = 1935 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 TVQLIMQLM 9 TVQL+ QLM Sbjct: 793 TVQLVTQLM 801>NP_001276865 Length = 1240 Score = 17.7 bits (34), Expect = 1935 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 TVQLIMQLM 9 TVQL+ QLM Sbjct: 778 TVQLVTQLM 786>NP_001005862 Length = 1225 Score = 17.7 bits (34), Expect = 1935 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 TVQLIMQLM 9 TVQL+ QLM Sbjct: 763 TVQLVTQLM 771>XP_005257197 Length = 1225 Score = 17.7 bits (34), Expect = 1935 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 TVQLIMQLM 9 TVQL+ QLM Sbjct: 763 TVQLVTQLM 771>XP_006721828 Length = 1336 Score = 17.7 bits (34), Expect = 1935 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 TVQLIMQLM 9 TVQL+ QLM Sbjct: 874 TVQLVTQLM 882>NP_001036064 Length = 1292 Score = 17.3 bits (33), Expect = 2528 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 TVQLIMQLM 9 T+QL+ QLM Sbjct: 791 TIQLVTQLM 799>NP_005226 Length = 1308 Score = 17.3 bits (33), Expect = 2528 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 TVQLIMQLM 9 T+QL+ QLM Sbjct: 791 TIQLVTQLM 799>XP_005246434 Length = 1282 Score = 17.3 bits (33), Expect = 2528 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 TVQLIMQLM 9 T+QL+ QLM Sbjct: 781 TIQLVTQLM 789>XP_005246433 Length = 1298 Score = 17.3 bits (33), Expect = 2528 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 TVQLIMQLM 9 T+QL+ QLM Sbjct: 781 TIQLVTQLM 789>XP_005246432 Length = 1307 Score = 17.3 bits (33), Expect = 2528 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 TVQLIMQLM 9 T+QL+ QLM Sbjct: 806 TIQLVTQLM 814>XP_006712427 Length = 1323 Score = 17.3 bits (33), Expect = 2528 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 TVQLIMQLM 9 T+QL+ QLM Sbjct: 806 TIQLVTQLM 814>XP_006718462 Length = 4966 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 TVQLIMQL 8 T+QL MQL Sbjct: 552 TMQLFMQL 559>XP_006710008 Length = 2014 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 TVQLIMQL 8 T+QL MQL Sbjct: 552 TMQLFMQL 559>NP_004658 Length = 4834 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 VQLIMQLM 9 VQLI QL+ Sbjct: 1009 VQLIQQLL 1016>XP_005257794 Length = 257 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 VQLIMQL 8 +QLIMQL Sbjct: 12 LQLIMQL 18>XP_006720790 Length = 4748 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 VQLIMQLM 9 VQLI QL+ Sbjct: 923 VQLIQQLL 930>XP_005268334 Length = 4796 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 VQLIMQLM 9 VQLI QL+ Sbjct: 971 VQLIQQLL 978>XP_005268333 Length = 4796 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 VQLIMQLM 9 VQLI QL+ Sbjct: 971 VQLIQQLL 978>XP_006720789 Length = 4829 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 VQLIMQLM 9 VQLI QL+ Sbjct: 1009 VQLIQQLL 1016>NP_115752 Length = 257 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 VQLIMQL 8 +QLIMQL Sbjct: 12 LQLIMQL 18Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.345 0.142 0.337 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 244,150 Number of extensions: 486 Number of successful extensions: 22 Number of sequences better than 10000.0: 22 Number of HSP's gapped: 22 Number of HSP's successfully gapped: 22 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.7 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |