Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_000042 18 1482 XP_006718908 18 1482 XP_005271621 18 1482 XP_006718907 18 1482 XP_006718906 18 1482 XP_005271619 18 1482 XP_005271618 18 1482 NP_060066 17 3301 NP_001239029 17 3301 NP_001239032 17 3301 NP_001239031 17 3301 NP_001269836 17 4312 NP_001269837 17 4312 NP_001269838 17 4312 NP_006576 17 4312 NP_061036 15 9605 NP_001263249 15 9605 NP_036291 15 9605 NP_058132 15 9605 NP_001027581 15 9605 XP_006719497 15 9605 NP_002525 15 9605>NP_000042 Length = 3056 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TSVSKVVEG 9 TSVSK VEG Sbjct: 2113 TSVSKEVEG 2121>XP_006718908 Length = 1708 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TSVSKVVEG 9 TSVSK VEG Sbjct: 765 TSVSKEVEG 773>XP_005271621 Length = 2708 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TSVSKVVEG 9 TSVSK VEG Sbjct: 1765 TSVSKEVEG 1773>XP_006718907 Length = 3050 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TSVSKVVEG 9 TSVSK VEG Sbjct: 2107 TSVSKEVEG 2115>XP_006718906 Length = 3056 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TSVSKVVEG 9 TSVSK VEG Sbjct: 2113 TSVSKEVEG 2121>XP_005271619 Length = 3056 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TSVSKVVEG 9 TSVSK VEG Sbjct: 2113 TSVSKEVEG 2121>XP_005271618 Length = 3056 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TSVSKVVEG 9 TSVSK VEG Sbjct: 2113 TSVSKEVEG 2121>NP_060066 Length = 1624 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 TSVSKVVEG 9 T VSK++EG Sbjct: 66 TCVSKLIEG 74>NP_001239029 Length = 1637 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 TSVSKVVEG 9 T VSK++EG Sbjct: 66 TCVSKLIEG 74>NP_001239032 Length = 1610 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 TSVSKVVEG 9 T VSK++EG Sbjct: 66 TCVSKLIEG 74>NP_001239031 Length = 1623 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 TSVSKVVEG 9 T VSK++EG Sbjct: 66 TCVSKLIEG 74>NP_001269836 Length = 529 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 SVSKVVEG 9 SVS+V+EG Sbjct: 105 SVSEVIEG 112>NP_001269837 Length = 497 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 SVSKVVEG 9 SVS+V+EG Sbjct: 73 SVSEVIEG 80>NP_001269838 Length = 475 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 SVSKVVEG 9 SVS+V+EG Sbjct: 51 SVSEVIEG 58>NP_006576 Length = 548 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 SVSKVVEG 9 SVS+V+EG Sbjct: 124 SVSEVIEG 131>NP_061036 Length = 348 Score = 15.4 bits (28), Expect = 9605 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 TSVSKVVEG 9 TSV VVEG Sbjct: 163 TSVYYVVEG 171>NP_001263249 Length = 304 Score = 15.4 bits (28), Expect = 9605 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 TSVSKVVEG 9 TSV VVEG Sbjct: 119 TSVYYVVEG 127>NP_036291 Length = 434 Score = 15.4 bits (28), Expect = 9605 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 SVSKVVEG 9 SVSKVV G Sbjct: 324 SVSKVVLG 331>NP_058132 Length = 400 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 VSKVVEG 9 VSKVV+G Sbjct: 55 VSKVVKG 61>NP_001027581 Length = 414 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 VSKVVEG 9 VSKVV+G Sbjct: 55 VSKVVKG 61>XP_006719497 Length = 384 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 VSKVVEG 9 VSKVV+G Sbjct: 55 VSKVVKG 61>NP_002525 Length = 364 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 VSKVVEG 9 VSKVV+G Sbjct: 55 VSKVVKG 61Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.293 0.113 0.259 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 268,080 Number of extensions: 252 Number of successful extensions: 22 Number of sequences better than 10000.0: 22 Number of HSP's gapped: 22 Number of HSP's successfully gapped: 22 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 17 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.0 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |